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@ -38,7 +38,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.1.9020</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.1.9021</small>
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@ -313,18 +313,18 @@ Unique: 2</p>
<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span></span>
<span><span class="co"># rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span></span>
<span><span class="co"># 1 I I S S I R</span></span>
<span><span class="co"># 2 I R R S I I</span></span>
<span><span class="co"># 3 R I S R R S</span></span>
<span><span class="co"># 4 I S I S I S</span></span>
<span><span class="co"># 5 S R S I S R</span></span>
<span><span class="co"># 6 I S I I S S</span></span>
<span><span class="co"># 1 S S R I R I</span></span>
<span><span class="co"># 2 I R S S S S</span></span>
<span><span class="co"># 3 I R S I S S</span></span>
<span><span class="co"># 4 R I S I S R</span></span>
<span><span class="co"># 5 I I S R S R</span></span>
<span><span class="co"># 6 S I S S R R</span></span>
<span><span class="co"># kanamycin</span></span>
<span><span class="co"># 1 I</span></span>
<span><span class="co"># 2 R</span></span>
<span><span class="co"># 3 S</span></span>
<span><span class="co"># 1 S</span></span>
<span><span class="co"># 2 S</span></span>
<span><span class="co"># 3 I</span></span>
<span><span class="co"># 4 R</span></span>
<span><span class="co"># 5 S</span></span>
<span><span class="co"># 5 I</span></span>
<span><span class="co"># 6 S</span></span></code></pre></div>
<p>We can now add the interpretation of MDR-TB to our data set. You can use:</p>
<div class="sourceCode" id="cb9"><pre class="downlit sourceCode r">
@ -356,40 +356,40 @@ Unique: 5</p>
<tr class="odd">
<td align="left">1</td>
<td align="left">Mono-resistant</td>
<td align="right">3193</td>
<td align="right">63.86%</td>
<td align="right">3193</td>
<td align="right">63.86%</td>
<td align="right">3182</td>
<td align="right">63.64%</td>
<td align="right">3182</td>
<td align="right">63.64%</td>
</tr>
<tr class="even">
<td align="left">2</td>
<td align="left">Negative</td>
<td align="right">996</td>
<td align="right">19.92%</td>
<td align="right">4189</td>
<td align="right">83.78%</td>
<td align="right">993</td>
<td align="right">19.86%</td>
<td align="right">4175</td>
<td align="right">83.50%</td>
</tr>
<tr class="odd">
<td align="left">3</td>
<td align="left">Multi-drug-resistant</td>
<td align="right">450</td>
<td align="right">9.00%</td>
<td align="right">4639</td>
<td align="right">92.78%</td>
<td align="right">477</td>
<td align="right">9.54%</td>
<td align="right">4652</td>
<td align="right">93.04%</td>
</tr>
<tr class="even">
<td align="left">4</td>
<td align="left">Poly-resistant</td>
<td align="right">241</td>
<td align="right">4.82%</td>
<td align="right">4880</td>
<td align="right">97.60%</td>
<td align="right">250</td>
<td align="right">5.00%</td>
<td align="right">4902</td>
<td align="right">98.04%</td>
</tr>
<tr class="odd">
<td align="left">5</td>
<td align="left">Extensively drug-resistant</td>
<td align="right">120</td>
<td align="right">2.40%</td>
<td align="right">98</td>
<td align="right">1.96%</td>
<td align="right">5000</td>
<td align="right">100.00%</td>
</tr>