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(v0.7.1.9036) preserve ab/mo classes in subsetting

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dr. M.S. (Matthijs) Berends
2019-08-12 14:48:09 +02:00
parent 1d423cca89
commit bd252a2984
23 changed files with 237 additions and 181 deletions
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5
tests/testthat/test-mo.R
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@ -159,8 +159,7 @@ test_that("as.mo works", {
septic_patients[1:10,] %>%
left_join_microorganisms() %>%
select(genus, species) %>%
as.mo() %>%
as.character())
as.mo())
# unknown results
expect_warning(as.mo(c("INVALID", "Yeah, unknown")))
@ -271,7 +270,7 @@ test_that("as.mo works", {
expect_equal(as.character(as.mo("F_CANDD_GLB")), "F_CANDD_GLA")
# debug mode
expect_warning(as.mo("kshgcjkhsdgkshjdfsfvsdfv", debug = TRUE, allow_uncertain = 3))
expect_output(print(suppressWarnings(as.mo("kshgcjkhsdgkshjdfsfvsdfv", debug = TRUE, allow_uncertain = 3))))
# ..coccus
expect_equal(as.character(as.mo(c("meningococ", "gonococ", "pneumococ"))),