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@ -38,7 +38,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9002</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9003</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -187,7 +187,7 @@
website update since they are based on randomly created values and the
page was written in <a href="https://rmarkdown.rstudio.com/" class="external-link">R
Markdown</a>. However, the methodology remains unchanged. This page was
generated on 14 March 2023.</p>
generated on 16 March 2023.</p>
<div class="section level2">
<h2 id="introduction">Introduction<a class="anchor" aria-label="anchor" href="#introduction"></a>
</h2>
@ -243,21 +243,21 @@ make the structure of your data generally look like this:</p>
</tr></thead>
<tbody>
<tr class="odd">
<td align="center">2023-03-14</td>
<td align="center">2023-03-16</td>
<td align="center">abcd</td>
<td align="center">Escherichia coli</td>
<td align="center">S</td>
<td align="center">S</td>
</tr>
<tr class="even">
<td align="center">2023-03-14</td>
<td align="center">2023-03-16</td>
<td align="center">abcd</td>
<td align="center">Escherichia coli</td>
<td align="center">S</td>
<td align="center">R</td>
</tr>
<tr class="odd">
<td align="center">2023-03-14</td>
<td align="center">2023-03-16</td>
<td align="center">efgh</td>
<td align="center">Escherichia coli</td>
<td align="center">R</td>
@ -962,110 +962,110 @@ antibiograms:</p>
<tr class="odd">
<td align="left">Cardial</td>
<td align="left">
<em>E. coli</em> (428-428)</td>
<td align="right">64</td>
<td align="right">60</td>
<em>E. coli</em> (386-386)</td>
<td align="right">61</td>
<td align="right">58</td>
<td align="right">57</td>
<td align="right">60</td>
<td align="right">62</td>
</tr>
<tr class="even">
<td align="left">Respiratory</td>
<td align="left">
<em>E. coli</em> (409-409)</td>
<td align="right">64</td>
<em>E. coli</em> (400-400)</td>
<td align="right">65</td>
<td align="right">61</td>
<td align="right">56</td>
<td align="right">58</td>
<td align="right">63</td>
<td align="right">62</td>
</tr>
<tr class="odd">
<td align="left">Rheumatic</td>
<td align="left">
<em>E. coli</em> (413-413)</td>
<td align="right">63</td>
<td align="right">59</td>
<td align="right">58</td>
<td align="right">66</td>
</tr>
<tr class="even">
<td align="left">Cardial</td>
<td align="left">
<em>K. pneumoniae</em> (96-96)</td>
<td align="right">71</td>
<td align="right">53</td>
<td align="right">64</td>
<td align="right">64</td>
</tr>
<tr class="odd">
<td align="left">Respiratory</td>
<td align="left">
<em>K. pneumoniae</em> (110-110)</td>
<td align="right">59</td>
<td align="right">53</td>
<td align="right">52</td>
<td align="right">54</td>
</tr>
<tr class="even">
<td align="left">Rheumatic</td>
<td align="left">
<em>K. pneumoniae</em> (110-110)</td>
<td align="right">60</td>
<td align="right">52</td>
<td align="right">62</td>
<td align="right">64</td>
</tr>
<tr class="odd">
<td align="left">Cardial</td>
<td align="left">
<em>S. aureus</em> (232-232)</td>
<td align="right">68</td>
<td align="right">51</td>
<td align="right">58</td>
<td align="right">66</td>
</tr>
<tr class="even">
<td align="left">Respiratory</td>
<td align="left">
<em>S. aureus</em> (205-205)</td>
<td align="right">58</td>
<td align="right">57</td>
<td align="right">58</td>
<td align="right">60</td>
</tr>
<tr class="odd">
<td align="left">Rheumatic</td>
<td align="left">
<em>S. aureus</em> (224-224)</td>
<td align="right">67</td>
<td align="right">62</td>
<td align="right">57</td>
<td align="right">62</td>
</tr>
<tr class="even">
<td align="left">Cardial</td>
<td align="left">
<em>S. pneumoniae</em> (154-154)</td>
<td align="right">62</td>
<td align="right">52</td>
<td align="right">57</td>
<td align="right">64</td>
</tr>
<tr class="odd">
<td align="left">Respiratory</td>
<td align="left">
<em>S. pneumoniae</em> (118-118)</td>
<td align="right">68</td>
<em>E. coli</em> (464-464)</td>
<td align="right">65</td>
<td align="right">56</td>
<td align="right">63</td>
<td align="right">59</td>
<td align="right">65</td>
</tr>
<tr class="even">
<td align="left">Cardial</td>
<td align="left">
<em>K. pneumoniae</em> (104-104)</td>
<td align="right">64</td>
<td align="right">52</td>
<td align="right">58</td>
<td align="right">62</td>
</tr>
<tr class="odd">
<td align="left">Respiratory</td>
<td align="left">
<em>K. pneumoniae</em> (94-94)</td>
<td align="right">66</td>
<td align="right">45</td>
<td align="right">60</td>
<td align="right">62</td>
</tr>
<tr class="even">
<td align="left">Rheumatic</td>
<td align="left">
<em>S. pneumoniae</em> (127-127)</td>
<td align="right">62</td>
<td align="right">61</td>
<em>K. pneumoniae</em> (118-118)</td>
<td align="right">59</td>
<td align="right">59</td>
<td align="right">59</td>
<td align="right">58</td>
</tr>
<tr class="odd">
<td align="left">Cardial</td>
<td align="left">
<em>S. aureus</em> (230-230)</td>
<td align="right">63</td>
<td align="right">57</td>
<td align="right">56</td>
<td align="right">66</td>
</tr>
<tr class="even">
<td align="left">Respiratory</td>
<td align="left">
<em>S. aureus</em> (222-222)</td>
<td align="right">66</td>
<td align="right">58</td>
<td align="right">57</td>
<td align="right">60</td>
<td align="right">69</td>
</tr>
<tr class="odd">
<td align="left">Rheumatic</td>
<td align="left">
<em>S. aureus</em> (209-209)</td>
<td align="right">65</td>
<td align="right">56</td>
<td align="right">60</td>
<td align="right">63</td>
</tr>
<tr class="even">
<td align="left">Cardial</td>
<td align="left">
<em>S. pneumoniae</em> (110-110)</td>
<td align="right">68</td>
<td align="right">57</td>
<td align="right">60</td>
<td align="right">64</td>
</tr>
<tr class="odd">
<td align="left">Respiratory</td>
<td align="left">
<em>S. pneumoniae</em> (142-142)</td>
<td align="right">67</td>
<td align="right">62</td>
<td align="right">65</td>
<td align="right">72</td>
</tr>
<tr class="even">
<td align="left">Rheumatic</td>
<td align="left">
<em>S. pneumoniae</em> (147-147)</td>
<td align="right">58</td>
<td align="right">49</td>
<td align="right">54</td>
<td align="right">61</td>
</tr>
</tbody>
</table>
@ -1090,46 +1090,46 @@ antibiograms:</p>
<tbody>
<tr class="odd">
<td align="left">Cardial</td>
<td align="left">Gram-negative (524-524)</td>
<td align="right">65</td>
<td align="right">58</td>
<td align="right">61</td>
</tr>
<tr class="even">
<td align="left">Respiratory</td>
<td align="left">Gram-negative (519-519)</td>
<td align="right">63</td>
<td align="right">55</td>
<td align="right">61</td>
</tr>
<tr class="odd">
<td align="left">Rheumatic</td>
<td align="left">Gram-negative (523-523)</td>
<td align="right">63</td>
<td align="right">57</td>
<td align="right">65</td>
</tr>
<tr class="even">
<td align="left">Cardial</td>
<td align="left">Gram-positive (386-386)</td>
<td align="right">66</td>
<td align="right">52</td>
<td align="right">65</td>
</tr>
<tr class="odd">
<td align="left">Respiratory</td>
<td align="left">Gram-positive (323-323)</td>
<td align="left">Gram-negative (490-490)</td>
<td align="right">62</td>
<td align="right">56</td>
<td align="right">62</td>
</tr>
<tr class="even">
<td align="left">Rheumatic</td>
<td align="left">Gram-positive (351-351)</td>
<td align="left">Respiratory</td>
<td align="left">Gram-negative (494-494)</td>
<td align="right">65</td>
<td align="right">58</td>
<td align="right">62</td>
</tr>
<tr class="odd">
<td align="left">Rheumatic</td>
<td align="left">Gram-negative (582-582)</td>
<td align="right">64</td>
<td align="right">57</td>
<td align="right">63</td>
</tr>
<tr class="even">
<td align="left">Cardial</td>
<td align="left">Gram-positive (340-340)</td>
<td align="right">64</td>
<td align="right">57</td>
<td align="right">65</td>
</tr>
<tr class="odd">
<td align="left">Respiratory</td>
<td align="left">Gram-positive (364-364)</td>
<td align="right">66</td>
<td align="right">59</td>
<td align="right">65</td>
</tr>
<tr class="even">
<td align="left">Rheumatic</td>
<td align="left">Gram-positive (356-356)</td>
<td align="right">62</td>
<td align="right">53</td>
<td align="right">62</td>
</tr>
</tbody>
</table>
<div class="sourceCode" id="cb21"><pre class="downlit sourceCode r">
@ -1152,45 +1152,45 @@ antibiograms:</p>
<tbody>
<tr class="odd">
<td align="left">Cardial</td>
<td align="left">Gram-negative (524-524)</td>
<td align="right">65</td>
<td align="right">76</td>
<td align="right">76</td>
</tr>
<tr class="even">
<td align="left">Respiratory</td>
<td align="left">Gram-negative (519-519)</td>
<td align="right">63</td>
<td align="right">76</td>
<td align="right">73</td>
</tr>
<tr class="odd">
<td align="left">Rheumatic</td>
<td align="left">Gram-negative (523-523)</td>
<td align="right">63</td>
<td align="left">Gram-negative (490-490)</td>
<td align="right">62</td>
<td align="right">76</td>
<td align="right">75</td>
</tr>
<tr class="even">
<td align="left">Respiratory</td>
<td align="left">Gram-negative (494-494)</td>
<td align="right">65</td>
<td align="right">77</td>
<td align="right">75</td>
</tr>
<tr class="odd">
<td align="left">Rheumatic</td>
<td align="left">Gram-negative (582-582)</td>
<td align="right">64</td>
<td align="right">75</td>
<td align="right">75</td>
</tr>
<tr class="even">
<td align="left">Cardial</td>
<td align="left">Gram-positive (386-386)</td>
<td align="left">Gram-positive (340-340)</td>
<td align="right">64</td>
<td align="right">75</td>
<td align="right">75</td>
</tr>
<tr class="odd">
<td align="left">Respiratory</td>
<td align="left">Gram-positive (364-364)</td>
<td align="right">66</td>
<td align="right">80</td>
<td align="right">77</td>
</tr>
<tr class="odd">
<td align="left">Respiratory</td>
<td align="left">Gram-positive (323-323)</td>
<td align="right">62</td>
<td align="right">76</td>
<td align="right">73</td>
</tr>
<tr class="even">
<td align="left">Rheumatic</td>
<td align="left">Gram-positive (351-351)</td>
<td align="right">65</td>
<td align="right">76</td>
<td align="right">76</td>
<td align="left">Gram-positive (356-356)</td>
<td align="right">62</td>
<td align="right">77</td>
<td align="right">74</td>
</tr>
</tbody>
</table>