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@ -10,7 +10,7 @@
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9047</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9049</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -82,6 +82,11 @@
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Get properties of an antibiotic
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</a>
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<a class="dropdown-item" href="../reference/av_property.html">
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<span class="fa fa-capsules"></span>
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Get properties of an antiviral agent
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</a>
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</div>
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</li>
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<li class="active nav-item">
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@ -178,43 +183,42 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 64 1 128 0.25 <=0.001 0.25 0.01 0.025 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 128 <=0.001 128 >=256 2 0.025 8 >=256 0.002 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 1 0.5 0.25 2 <=0.001 1 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.0625 0.01 4 64 0.005 32 2 0.01 <=0.001</span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 8 128 64 2 8 0.002 0.01 0.0625 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 64 0.01 16 0.25 0.0625 >=256 <=0.001</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 7 18 38 42 43 47 45 10 45 24 17 15 24 45 26 23 44 50 45 50 19 28 25 47 11</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 29 36 20 49 33 28 28 23 39 22 10 47 23 49 47 42 30 47 22 37 47 9 19 45 37</span>
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<span class="r-in"><span><span class="fu">random_rsi</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'rsi'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R S R I I R I R R R I R I I S I I S I R I R R I S</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] I S I I I S R R S I R I I R I R S R S R S I R R R</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.025 0.001 2 0.5 8 0.01 0.005 32 256 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.025 0.025 0.025 0.002 0.25 4 1 0.0625 0.025 0.0625</span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 2 8 0.002 0.5 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.005 32 0.025 0.005 0.005 4 2 0.005 0.01 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.5 2 0.25 0.025 2 <=0.001 0.5 8 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 8 0.025 8 0.025 8 2 0.0625 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] >=64 32 1 <=0.5 16 1 16 2 1 1 32 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] <=0.5 2 32 2 8 4 16 32 2 1 4 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 16 4 32 0.5 >=64 8 1 1 >=64 0.5 32 >=64 0.5 >=64</span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 0.5 32 16 4 1 32 >=64 0.5 0.5 1 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.125 >=4 0.5 1 1 0.5 1 0.125 0.125 0.25 0.125 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 0.25 0.125 0.5 0.5 0.125 >=4 >=4 2 >=4 0.5 2 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] >=8 2 1 >=8 2 2 >=8 1 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 1 1 2 0.5 2 0.5 0.5 0.5 >=8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.25 <=0.125 1 <=0.125 0.25 0.5 2 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 42 28 19 47 45 39 48 47 43 30 43 37 43 34 16 45 36 22 26 25 11 28 17 11 41</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 42 24 15 28 24 44 34 35 49 40 50 26 49 10 50 42 24 43 18 14 47 41 50 33 29</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 13 16 12 16 14 12 15 14 12 11 13 16 12 14 16 12 13 12 17 16 11 14 12 13 15</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 14 15 15 12 17 12 11 16 13 12 14 12 14 16 15 17 11 13 13 13 13 12 15 11 13</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 25 18 19 19 27 25 18 24 27 23 18 17 16 27 26 15 25 26 24 26 15 17 26 20 16</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 23 16 24 19 17 23 16 21 15 19 21 22 16 23 26 15 25 22 20 26 26 16 22 26 23</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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