P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-27 16:27:57 +02:00
Code Releases Activity

Built site for AMR: 2.0.0.9035@66eeeb4

Browse Source
This commit is contained in:
github-actions
2023-07-11 12:37:00 +00:00
parent c04e1e825d
commit be187041ab
77 changed files with 235 additions and 201 deletions
Download Patch File Download Diff File Expand all files Collapse all files

54
articles/MDR.html
View File

@ -38,7 +38,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9034</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9035</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -402,18 +402,18 @@ names or codes, this would have worked exactly the same way:</p>
<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span></span>
<span><span class="co">#&gt; rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span></span>
<span><span class="co">#&gt; 1 R I R R I I</span></span>
<span><span class="co">#&gt; 2 R I I I R I</span></span>
<span><span class="co">#&gt; 3 S S R I I R</span></span>
<span><span class="co">#&gt; 4 S R S R S I</span></span>
<span><span class="co">#&gt; 5 I R S I R I</span></span>
<span><span class="co">#&gt; 6 I I I S S R</span></span>
<span><span class="co">#&gt; 1 S S I S I I</span></span>
<span><span class="co">#&gt; 2 S I R R S S</span></span>
<span><span class="co">#&gt; 3 R S I R I I</span></span>
<span><span class="co">#&gt; 4 S I I R R R</span></span>
<span><span class="co">#&gt; 5 S R I S R R</span></span>
<span><span class="co">#&gt; 6 S S I S S I</span></span>
<span><span class="co">#&gt; kanamycin</span></span>
<span><span class="co">#&gt; 1 S</span></span>
<span><span class="co">#&gt; 1 I</span></span>
<span><span class="co">#&gt; 2 S</span></span>
<span><span class="co">#&gt; 3 R</span></span>
<span><span class="co">#&gt; 4 S</span></span>
<span><span class="co">#&gt; 5 I</span></span>
<span><span class="co">#&gt; 3 S</span></span>
<span><span class="co">#&gt; 4 I</span></span>
<span><span class="co">#&gt; 5 S</span></span>
<span><span class="co">#&gt; 6 S</span></span></code></pre></div>
<p>We can now add the interpretation of MDR-TB to our data set. You can
use:</p>
@ -455,40 +455,40 @@ Unique: 5</p>
<tr class="odd">
<td align="left">1</td>
<td align="left">Mono-resistant</td>
<td align="right">3230</td>
<td align="right">64.60%</td>
<td align="right">3230</td>
<td align="right">64.60%</td>
<td align="right">3201</td>
<td align="right">64.02%</td>
<td align="right">3201</td>
<td align="right">64.02%</td>
</tr>
<tr class="even">
<td align="left">2</td>
<td align="left">Negative</td>
<td align="right">955</td>
<td align="right">19.10%</td>
<td align="right">4185</td>
<td align="right">83.70%</td>
<td align="right">976</td>
<td align="right">19.52%</td>
<td align="right">4177</td>
<td align="right">83.54%</td>
</tr>
<tr class="odd">
<td align="left">3</td>
<td align="left">Multi-drug-resistant</td>
<td align="right">477</td>
<td align="right">9.54%</td>
<td align="right">4662</td>
<td align="right">93.24%</td>
<td align="right">4654</td>
<td align="right">93.08%</td>
</tr>
<tr class="even">
<td align="left">4</td>
<td align="left">Poly-resistant</td>
<td align="right">236</td>
<td align="right">4.72%</td>
<td align="right">4898</td>
<td align="right">97.96%</td>
<td align="right">241</td>
<td align="right">4.82%</td>
<td align="right">4895</td>
<td align="right">97.90%</td>
</tr>
<tr class="odd">
<td align="left">5</td>
<td align="left">Extensively drug-resistant</td>
<td align="right">102</td>
<td align="right">2.04%</td>
<td align="right">105</td>
<td align="right">2.10%</td>
<td align="right">5000</td>
<td align="right">100.00%</td>
</tr>