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(v1.7.0.9001) CLSI 2020 guideline

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dr. M.S. (Matthijs) Berends
2021-06-01 15:33:06 +02:00
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@ -98,15 +98,22 @@ This package can be used for:
#### Latest released version
This package is [available here](https://msberends.r-universe.dev) on the [rOpenSci R-universe platform](https://ropensci.org/r-universe/), as CRAN does not allow frequent updates of large packages (though the `AMR` package is only 7-9 MB). With CRAN, we apparently cannot update this package frequently enough to implement the latest EUCAST/CLSI guidelines or the latest microbial taxonomy.
This package is [available here](https://msberends.r-universe.dev) on the [rOpenSci R-universe platform](https://ropensci.org/r-universe/), as CRAN does not allow frequent updates of large packages (though the `AMR` package is only 7-9 MB). We are working on splitting this package into two: a new data package containing the microbial taxonomy, and the `AMR` package that only contains all functions.
Install this package in R by using the command:
In the meanwhile, you have to add [our R-universe address](https://msberends.r-universe.dev) to your list of repositories ('repos'), by running:
```r
install.packages("AMR", repos = "https://msberends.r-universe.dev")
options(repos = c(getOption("repos"),
msberends = "https://msberends.r-universe.dev"))
```
It will be downloaded and installed automatically.
You can now install or update the `AMR` package in the same way you are used to:
```r
install.packages("AMR")
```
It will be downloaded and installed automatically. For RStudio, click on the menu *Tools* > *Install Packages...* and then type in "AMR" and press <kbd>Install</kbd>.
**Note:** Not all functions on this website may be available in this latest release. To use all functions and data sets mentioned on this website, install the latest development version.