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fix coercing NA to custom codes, fixes #107

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dr. M.S. (Matthijs) Berends
2023-05-08 13:04:18 +02:00
parent 9de19fdc49
commit bf08d136a0
9 changed files with 19719 additions and 56 deletions
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NEWS.md
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# AMR 2.0.0.9013
# AMR 2.0.0.9014
## Changed
* formatting fix for `sir_interpretation_history()`
* Fixed some WHONET codes for microorganisms and consequently a couple of entries in `clinical_breakpoints`
* Added microbial codes for Gram-negative/positive anaerobic bacteria
* `mo_rank()` now returns `NA` for 'unknown' microorganisms (`B_ANAER`, `B_ANAER-NEG`, `B_ANAER-POS`, `B_GRAMN`, `B_GRAMP`, `F_FUNGUS`, `F_YEAST`, and `UNKNOWN`)
* Fixed a bug for `as.mo()` that led to coercion of `NA` values when using custom microorganism codes
# AMR 2.0.0