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(v3.0.0.9025) fix todo tracker

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dr. M.S. (Matthijs) Berends
2025-09-04 14:40:24 +02:00
parent d2ced1db61
commit c1c49fa463
5 changed files with 15 additions and 7 deletions
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7
.github/workflows/todo-tracker.yml vendored
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@@ -47,19 +47,20 @@ jobs:
echo "" >> todo.md echo "" >> todo.md
echo "_This overview is automatically updated on each push to \`main\`. It provides an automated overview of all mentions of the text \`TODO\`._" >> todo.md echo "_This overview is automatically updated on each push to \`main\`. It provides an automated overview of all mentions of the text \`TODO\`._" >> todo.md
echo "" >> todo.md echo "" >> todo.md
todos=$(grep -rn --include=\*.{R,Rmd,yaml,yml,md,css,js} --exclude=todo-tracker.yml "TODO" . || true) todos=$(grep -rn --include=\*.{R,Rmd,yaml,yml,md,css,js} --exclude={todo-tracker.yml,todo.md} "TODO" . || true)
if [ -z "$todos" ]; then if [ -z "$todos" ]; then
echo "✅ No TODOs found." >> todo.md echo "✅ No TODOs found." >> todo.md
else else
echo "$todos" | awk -F: ' echo "$todos" | awk -F: -v repo="https://github.com/msberends/AMR/blob/main/" '
{ {
file = $1 file = $1
gsub("^\\./", "", file) # remove leading ./ if present
line = $2 line = $2
text = substr($0, index($0,$3)) text = substr($0, index($0,$3))
if (file != last_file) { if (file != last_file) {
if (last_file != "") print "```" if (last_file != "") print "```"
print "" print ""
print "### " file print "### [`" file "`](" repo file ")"
print "```r" print "```r"
last_file = file last_file = file
} }

2
DESCRIPTION
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@@ -1,5 +1,5 @@
Package: AMR Package: AMR
Version: 3.0.0.9024 Version: 3.0.0.9025
Date: 2025-09-04 Date: 2025-09-04
Title: Antimicrobial Resistance Data Analysis Title: Antimicrobial Resistance Data Analysis
Description: Functions to simplify and standardise antimicrobial resistance (AMR) Description: Functions to simplify and standardise antimicrobial resistance (AMR)

2
NEWS.md
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@@ -1,4 +1,4 @@
# AMR 3.0.0.9024 # AMR 3.0.0.9025
This is a bugfix release following the release of v3.0.0 in June 2025. This is a bugfix release following the release of v3.0.0 in June 2025.

5
README.Rmd
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@@ -49,8 +49,11 @@ To install the latest 'beta' version:
```{r, eval = FALSE} ```{r, eval = FALSE}
install.packages("AMR", repos = "beta.amr-for-r.org") install.packages("AMR", repos = "beta.amr-for-r.org")
```
# if this does not work, try to install directly from GitHub using the 'remotes' package: If this does not work, try to install directly from GitHub using the `remotes` package:
```{r, eval = FALSE}
remotes::install_github("msberends/AMR") remotes::install_github("msberends/AMR")
``` ```

6
README.md
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@@ -58,8 +58,12 @@ To install the latest ‘beta’ version:
``` r ``` r
install.packages("AMR", repos = "beta.amr-for-r.org") install.packages("AMR", repos = "beta.amr-for-r.org")
```
# if this does not work, try to install directly from GitHub using the 'remotes' package: If this does not work, try to install directly from GitHub using the
`remotes` package:
``` r
remotes::install_github("msberends/AMR") remotes::install_github("msberends/AMR")
``` ```