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fix for antibiogram(), transform WHONET data set to sir

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dr. M.S. (Matthijs) Berends
2023-02-22 15:40:05 +01:00
parent dad25302f2
commit c2cfc5ef84
10 changed files with 20 additions and 30 deletions
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R/ab.R
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@@ -249,8 +249,6 @@ as.ab <- function(x, flag_multiple_results = TRUE, info = interactive(), ...) {
next
}
print("here")
# length of input is quite long, and Levenshtein distance is only max 2
if (nchar(x[i]) >= 10) {
levenshtein <- as.double(utils::adist(x[i], AMR_env$AB_lookup$generalised_name))