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@ -38,7 +38,7 @@
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@ -380,19 +380,19 @@ names or codes, this would have worked exactly the same way:</p>
<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span></span>
<span><span class="co"># rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span></span>
<span><span class="co"># 1 I S R I I I</span></span>
<span><span class="co"># 2 I S I I S I</span></span>
<span><span class="co"># 3 S I S S I R</span></span>
<span><span class="co"># 4 R R R R I S</span></span>
<span><span class="co"># 5 R S I I R I</span></span>
<span><span class="co"># 6 I I I R R R</span></span>
<span><span class="co"># 1 S S R I I R</span></span>
<span><span class="co"># 2 R R S S I I</span></span>
<span><span class="co"># 3 S R S S I S</span></span>
<span><span class="co"># 4 R I R S S R</span></span>
<span><span class="co"># 5 R I R I S S</span></span>
<span><span class="co"># 6 I I I R S I</span></span>
<span><span class="co"># kanamycin</span></span>
<span><span class="co"># 1 I</span></span>
<span><span class="co"># 2 I</span></span>
<span><span class="co"># 2 R</span></span>
<span><span class="co"># 3 R</span></span>
<span><span class="co"># 4 I</span></span>
<span><span class="co"># 5 R</span></span>
<span><span class="co"># 6 S</span></span></code></pre></div>
<span><span class="co"># 6 R</span></span></code></pre></div>
<p>We can now add the interpretation of MDR-TB to our data set. You can
use:</p>
<div class="sourceCode" id="cb9"><pre class="downlit sourceCode r">
@ -433,40 +433,40 @@ Unique: 5</p>
<tr class="odd">
<td align="left">1</td>
<td align="left">Mono-resistant</td>
<td align="right">3250</td>
<td align="right">65.00%</td>
<td align="right">3250</td>
<td align="right">65.00%</td>
<td align="right">3174</td>
<td align="right">63.48%</td>
<td align="right">3174</td>
<td align="right">63.48%</td>
</tr>
<tr class="even">
<td align="left">2</td>
<td align="left">Negative</td>
<td align="right">977</td>
<td align="right">19.54%</td>
<td align="right">4227</td>
<td align="right">84.54%</td>
<td align="right">1008</td>
<td align="right">20.16%</td>
<td align="right">4182</td>
<td align="right">83.64%</td>
</tr>
<tr class="odd">
<td align="left">3</td>
<td align="left">Multi-drug-resistant</td>
<td align="right">433</td>
<td align="right">8.66%</td>
<td align="right">4660</td>
<td align="right">93.20%</td>
<td align="right">451</td>
<td align="right">9.02%</td>
<td align="right">4633</td>
<td align="right">92.66%</td>
</tr>
<tr class="even">
<td align="left">4</td>
<td align="left">Poly-resistant</td>
<td align="right">250</td>
<td align="right">5.00%</td>
<td align="right">4910</td>
<td align="right">98.20%</td>
<td align="right">255</td>
<td align="right">5.10%</td>
<td align="right">4888</td>
<td align="right">97.76%</td>
</tr>
<tr class="odd">
<td align="left">5</td>
<td align="left">Extensively drug-resistant</td>
<td align="right">90</td>
<td align="right">1.80%</td>
<td align="right">112</td>
<td align="right">2.24%</td>
<td align="right">5000</td>
<td align="right">100.00%</td>
</tr>