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Built site for AMR: 1.8.2.9103@126afb0

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@ -10,7 +10,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9102</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9103</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -188,44 +188,43 @@
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class 'mic'</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 4 32 &gt;=128 0.01 0.002 64 0.5 0.125 0.25 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [10] 0.01 0.01 1 0.125 0.25 64 16 2 0.0625 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [19] 0.125 0.25 0.005 0.002 0.005 &lt;=0.001 &gt;=128 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 16 0.01 0.025 0.25 0.01 0.0625 0.001 16 0.01 128 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [11] 16 64 0.01 0.5 0.005 4 64 0.002 0.125 0.01 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [21] 0.0625 0.001 0.025 0.5 &gt;=256 </span>
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class 'disk'</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 32 13 27 48 48 41 19 8 40 46 25 43 7 35 15 21 43 24 22 42 48 43 25 16 43</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 41 50 9 45 7 8 44 29 22 7 44 30 28 20 38 50 38 40 18 12 13 35 50 8 12</span>
<span class="r-in"><span><span class="fu">random_sir</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class 'sir'</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] R I I S R R R I R I R R S I S R S I I I I S I S S</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] S I S R S I S R S R S R I I S S I S S I I S S S R</span>
<span class="r-in"><span></span></span>
<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class 'mic'</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 0.5 0.125 4 &gt;=256 1 0.0625 4 0.025 4 &gt;=256 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [11] 0.025 0.01 16 0.005 16 0.002 0.125 0.005 0.001 4 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [21] 0.001 8 0.125 &gt;=256 0.125 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 32 0.01 0.5 8 2 16 0.01 0.005 &gt;=64 0.025 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [11] 0.01 0.0625 &gt;=64 2 0.025 16 8 0.001 0.01 &gt;=64 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [21] 1 32 2 &gt;=64 0.25 </span>
<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class 'mic'</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] &lt;=0.5 16 4 1 &lt;=0.5 2 &lt;=0.5 4 1 4 &lt;=0.5 16 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [13] 8 8 16 8 1 8 32 &lt;=0.5 1 32 &lt;=0.5 16 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [25] 16 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 8 32 &gt;=64 8 &lt;=1 2 2 &lt;=1 8 8 16 2 32 4 2 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [16] &lt;=1 8 &lt;=1 &lt;=1 32 4 4 &gt;=64 32 16 </span>
<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class 'mic'</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 0.25 &lt;=0.0625 0.125 4 &gt;=16 &lt;=0.0625 4 &lt;=0.0625</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [9] 8 &lt;=0.0625 1 0.125 0.5 4 2 0.125 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [17] 4 &gt;=16 0.5 0.5 0.5 1 8 1 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [25] 1 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 0.25 0.25 0.5 0.25 0.125 4 8 8 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [9] 1 0.125 1 &lt;=0.0625 4 &lt;=0.0625 &lt;=0.0625 1 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [17] 0.125 1 0.125 2 2 4 4 1 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [25] 8 </span>
<span class="r-in"><span></span></span>
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class 'disk'</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 38 39 25 42 14 43 18 25 41 14 24 19 45 27 44 40 46 12 50 40 8 45 12 46 29</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 12 46 47 45 33 42 43 46 46 50 41 41 50 21 50 33 17 18 43 25 47 8 25 22 50</span>
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class 'disk'</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 17 12 17 12 15 16 15 12 13 15 16 14 16 16 17 15 16 14 17 14 15 17 16 17 16</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 11 15 16 16 16 15 16 16 11 15 15 11 12 16 16 13 15 14 17 14 17 12 15 13 15</span>
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class 'disk'</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 24 25 23 16 25 27 22 16 27 16 24 18 25 20 20 19 22 20 26 24 15 17 20 17 26</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 16 25 17 26 18 23 20 17 15 24 20 23 20 16 24 27 25 17 23 25 25 25 24 25 17</span>
<span class="r-in"><span><span class="co"># }</span></span></span>
</code></pre></div>
</div>