(v1.3.0.9014) as.mo() speed improvement

This commit is contained in:
2020-09-03 12:31:48 +02:00
parent 18e52f2725
commit c4b87fe241
93 changed files with 739 additions and 609 deletions
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+1 -2
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@@ -955,11 +955,10 @@ microorganisms <- microorganisms %>%
class(microorganisms$mo) <- c("mo", "character")
microorganisms.old <- microorganisms.old %>% filter(fullname != "Mycobacterium tuberculosis")
usethis::use_data(microorganisms, overwrite = TRUE, version = 2)
usethis::use_data(microorganisms, overwrite = TRUE, version = 2, compress = "xz")
usethis::use_data(microorganisms.old, overwrite = TRUE, version = 2)
# OLD CODE ----------------------------------------------------------------
# to keep all the old IDs:
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@@ -26,6 +26,8 @@ de biotype Biotyp FALSE FALSE
de vegetative vegetativ FALSE FALSE
de ([([ ]*?)group \\1Gruppe FALSE FALSE
de ([([ ]*?)Group \\1Gruppe FALSE FALSE
de no .*growth keine? .*wachstum FALSE TRUE
nl Coagulase-negative Staphylococcus Coagulase-negatieve Staphylococcus FALSE FALSE
nl Coagulase-positive Staphylococcus Coagulase-positieve Staphylococcus FALSE FALSE
nl Beta-haemolytic Streptococcus Beta-hemolytische Streptococcus FALSE FALSE
@@ -56,6 +58,7 @@ nl antibiotic antibioticum FALSE FALSE
nl Antibiotic Antibioticum FALSE FALSE
nl Drug Middel FALSE FALSE
nl drug middel FALSE FALSE
es Coagulase-negative Staphylococcus Staphylococcus coagulasa negativo FALSE FALSE
es Coagulase-positive Staphylococcus Staphylococcus coagulasa positivo FALSE FALSE
es Beta-haemolytic Streptococcus Streptococcus Beta-hemolítico FALSE FALSE
@@ -83,6 +86,7 @@ es biotype biotipo FALSE FALSE
es vegetative vegetativo FALSE FALSE
es ([([ ]*?)group \\1grupo FALSE FALSE
es ([([ ]*?)Group \\1Grupo FALSE FALSE
it Coagulase-negative Staphylococcus Staphylococcus negativo coagulasi FALSE FALSE
it Coagulase-positive Staphylococcus Staphylococcus positivo coagulasi FALSE FALSE
it Beta-haemolytic Streptococcus Streptococcus Beta-emolitico FALSE FALSE
@@ -108,6 +112,7 @@ it biotype biotipo FALSE FALSE
it vegetative vegetativo FALSE FALSE
it ([([ ]*?)group \\1gruppo FALSE FALSE
it ([([ ]*?)Group \\1Gruppo FALSE FALSE
fr Coagulase-negative Staphylococcus Staphylococcus à coagulase négative FALSE FALSE
fr Coagulase-positive Staphylococcus Staphylococcus à coagulase positif FALSE FALSE
fr Beta-haemolytic Streptococcus Streptococcus Bêta-hémolytique FALSE FALSE
@@ -132,6 +137,7 @@ fr biogroup biogroupe FALSE FALSE
fr vegetative végétatif FALSE FALSE
fr ([([ ]*?)group \\1groupe FALSE FALSE
fr ([([ ]*?)Group \\1Groupe FALSE FALSE
pt Coagulase-negative Staphylococcus Staphylococcus coagulase negativo FALSE FALSE
pt Coagulase-positive Staphylococcus Staphylococcus coagulase positivo FALSE FALSE
pt Beta-haemolytic Streptococcus Streptococcus Beta-hemolítico FALSE FALSE
1 lang pattern replacement fixed ignore.case
26 de vegetative vegetativ FALSE FALSE
27 de ([([ ]*?)group \\1Gruppe FALSE FALSE
28 de ([([ ]*?)Group \\1Gruppe FALSE FALSE
29 de no .*growth keine? .*wachstum FALSE TRUE
30 nl Coagulase-negative Staphylococcus Coagulase-negatieve Staphylococcus FALSE FALSE
31 nl Coagulase-negative Staphylococcus Coagulase-positive Staphylococcus Coagulase-negatieve Staphylococcus Coagulase-positieve Staphylococcus FALSE FALSE
32 nl Coagulase-positive Staphylococcus Beta-haemolytic Streptococcus Coagulase-positieve Staphylococcus Beta-hemolytische Streptococcus FALSE FALSE
33 nl Beta-haemolytic Streptococcus unknown Gram-negatives Beta-hemolytische Streptococcus onbekende Gram-negatieven FALSE FALSE
58 nl Antibiotic Drug Middel Antibioticum FALSE FALSE
59 nl Drug Middel drug middel FALSE FALSE
60 nl es drug middel Coagulase-negative Staphylococcus FALSE Staphylococcus coagulasa negativo FALSE FALSE
61 es Coagulase-positive Staphylococcus Staphylococcus coagulasa positivo FALSE FALSE
62 es Coagulase-negative Staphylococcus Beta-haemolytic Streptococcus Staphylococcus coagulasa negativo Streptococcus Beta-hemolítico FALSE FALSE
63 es Coagulase-positive Staphylococcus unknown Gram-negatives Staphylococcus coagulasa positivo Gram negativos desconocidos FALSE FALSE
64 es Beta-haemolytic Streptococcus unknown Gram-positives Streptococcus Beta-hemolítico Gram positivos desconocidos FALSE FALSE
86 es vegetative ([([ ]*?)Group vegetativo \\1Grupo FALSE FALSE
87 es it ([([ ]*?)group Coagulase-negative Staphylococcus \\1grupo Staphylococcus negativo coagulasi FALSE FALSE
88 es it ([([ ]*?)Group Coagulase-positive Staphylococcus \\1Grupo Staphylococcus positivo coagulasi FALSE FALSE
89 it Beta-haemolytic Streptococcus Streptococcus Beta-emolitico FALSE FALSE
90 it Coagulase-negative Staphylococcus unknown Gram-negatives Staphylococcus negativo coagulasi Gram negativi sconosciuti FALSE FALSE
91 it Coagulase-positive Staphylococcus unknown Gram-positives Staphylococcus positivo coagulasi Gram positivi sconosciuti FALSE FALSE
92 it Beta-haemolytic Streptococcus unknown name Streptococcus Beta-emolitico nome sconosciuto FALSE FALSE
112 it fr vegetative Coagulase-negative Staphylococcus vegetativo Staphylococcus à coagulase négative FALSE FALSE
113 it fr ([([ ]*?)group Coagulase-positive Staphylococcus \\1gruppo Staphylococcus à coagulase positif FALSE FALSE
114 it fr ([([ ]*?)Group Beta-haemolytic Streptococcus \\1Gruppo Streptococcus Bêta-hémolytique FALSE FALSE
115 fr unknown Gram-negatives Gram négatifs inconnus FALSE FALSE
116 fr Coagulase-negative Staphylococcus unknown Gram-positives Staphylococcus à coagulase négative Gram positifs inconnus FALSE FALSE
117 fr Coagulase-positive Staphylococcus unknown name Staphylococcus à coagulase positif nom inconnu FALSE FALSE
118 fr Beta-haemolytic Streptococcus unknown kingdom Streptococcus Bêta-hémolytique règme inconnu FALSE FALSE
137 fr pt vegetative Coagulase-positive Staphylococcus végétatif Staphylococcus coagulase positivo FALSE FALSE
138 fr pt ([([ ]*?)group Beta-haemolytic Streptococcus \\1groupe Streptococcus Beta-hemolítico FALSE FALSE
139 fr pt ([([ ]*?)Group unknown Gram-negatives \\1Groupe Gram negativos desconhecidos FALSE FALSE
140 pt unknown Gram-positives Gram positivos desconhecidos FALSE FALSE
141 pt Coagulase-negative Staphylococcus unknown name Staphylococcus coagulase negativo nome desconhecido FALSE FALSE
142 pt Coagulase-positive Staphylococcus unknown kingdom Staphylococcus coagulase positivo reino desconhecido FALSE FALSE
143 pt Beta-haemolytic Streptococcus unknown phylum Streptococcus Beta-hemolítico filo desconhecido FALSE FALSE