P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-09 08:52:15 +02:00
Code Releases Activity

(v1.3.0.9014) as.mo() speed improvement

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2020-09-03 12:31:48 +02:00
parent 18e52f2725
commit c4b87fe241
93 changed files with 739 additions and 609 deletions
Download Patch File Download Diff File Expand all files Collapse all files

16
docs/reference/WHONET.html
View File

@ -49,7 +49,7 @@
<script src="../extra.js"></script>
<meta property="og:title" content="Data set with 500 isolates - WHONET example — WHONET" />
<meta property="og:description" content="This example data set has the exact same structure as an export file from WHONET. Such files can be used with this package, as this example data set shows. The data itself was based on our example_isolates data set." />
<meta property="og:description" content="This example data set has the exact same structure as an export file from WHONET. Such files can be used with this package, as this example data set shows. The antibiotic results are based on our example_isolates data set. All patient names are created using online surname generators and are only in place for practice purposes." />
<meta property="og:image" content="https://msberends.github.io/AMR/logo.svg" />
@ -82,7 +82,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.3.0.9007</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.3.0.9014</span>
</span>
</div>
@ -122,7 +122,7 @@
<a href="../articles/datasets.html">
<span class="fa fa-database"></span>
Download our reference data sets for own use
Data sets for download / own use
</a>
</li>
<li>
@ -239,7 +239,7 @@
</div>
<div class="ref-description">
<p>This example data set has the exact same structure as an export file from WHONET. Such files can be used with this package, as this example data set shows. The data itself was based on our <a href='example_isolates.html'>example_isolates</a> data set.</p>
<p>This example data set has the exact same structure as an export file from WHONET. Such files can be used with this package, as this example data set shows. The antibiotic results are based on our <a href='example_isolates.html'>example_isolates</a> data set. All patient names are created using online surname generators and are only in place for practice purposes.</p>
</div>
<pre class="usage"><span class='kw'>WHONET</span></pre>
@ -253,10 +253,10 @@
<li><p><code>Organism</code><br /> Name of the microorganism. Before analysis, you should transform this to a valid microbial class, using <code><a href='as.mo.html'>as.mo()</a></code>.</p></li>
<li><p><code>Country</code><br /> Country of origin</p></li>
<li><p><code>Laboratory</code><br /> Name of laboratory</p></li>
<li><p><code>Last name</code><br /> Last name of patient</p></li>
<li><p><code>First name</code><br /> Initial of patient</p></li>
<li><p><code>Sex</code><br /> Gender of patient</p></li>
<li><p><code>Age</code><br /> Age of patient</p></li>
<li><p><code>Last name</code><br /> Fictitious last name of patient</p></li>
<li><p><code>First name</code><br /> Fictitious initial of patient</p></li>
<li><p><code>Sex</code><br /> Fictitious gender of patient</p></li>
<li><p><code>Age</code><br /> Fictitious age of patient</p></li>
<li><p><code>Age category</code><br /> Age group, can also be looked up using <code><a href='age_groups.html'>age_groups()</a></code></p></li>
<li><p><code>Date of admission</code><br /> Date of hospital admission</p></li>
<li><p><code>Specimen date</code><br /> Date when specimen was received at laboratory</p></li>