(v1.2.0.9007) Tidyverse selections

NEWS.md

@@ -1,15 +1,29 @@
-# AMR 1.2.0.9006
-## <small>Last updated: 11-Jun-2020</small>
+# AMR 1.2.0.9007
+## <small>Last updated: 17-Jun-2020</small>
+
+### New
+* [Tidyverse selections](https://tidyselect.r-lib.org/reference/language.html), that help to select the columns of antibiotics that are of a specific antibiotic class, without the need to define the columns or antibiotic abbreviations. They can be used in any function that allows Tidyverse selections, like `dplyr::select()` and `tidyr::pivot_longer()`:
+  ```r
+  library(dplyr)
+  
+  example_isolates %>% 
+    select(carbapenems())
+  #> Selecting carbapenems: `IPM` (imipenem), `MEM` (meropenem)
+    
+  tibble(J01CA01 = "S") %>%
+    select(penicillins())
+  #> Selecting beta-lactams/penicillins: `J01CA01` (ampicillin)
+  ```
 
 ### Changed
 * Fixed a bug where `eucast_rules()` would not work on a tibble when the `tibble` or `dplyr` package was loaded
 * All `*_join_microorganisms()` functions now return the original data class (e.g. tibbles and data.tables)
 * Fixed a bug where `as.ab()` would return an error on invalid input values
-* Fixed a bug for using grouped versions of `rsi_df()`, `proportion_df()` and `count_df()`
+* Fixed a bug for using grouped versions of `rsi_df()`, `proportion_df()` and `count_df()`, and fixed a bug where not all different antimicrobial results were added as rows
 * Added function `filter_penicillins()` to filter isolates on a specific result in any column with a name in the antimicrobial 'penicillins' class (more specific: ATC subgroup *Beta-lactam antibacterials, penicillins*)
 * Added official antimicrobial names to all `filter_ab_class()` functions, such as `filter_aminoglycosides()`
 * Added antibiotics code "FOX1" for cefoxitin screening (abbreviation "cfsc") to the `antibiotics` data set
-* Improved auto-determination for columns of types <mo> and <Date>
+* Improved auto-determination for columns of types `<mo>` and `<Date>`
 
 # AMR 1.2.0