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(v0.7.1.9007) mdro update

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This commit is contained in:
dr. M.S. (Matthijs) Berends
2019-07-04 15:26:07 +02:00
parent 4ff20af123
commit c57ad26c5b
26 changed files with 146 additions and 117 deletions
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3
tests/testthat/test-freq.R
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@ -182,5 +182,8 @@ test_that("frequency table works", {
"Just a string") # not a freq tbl
))
# directly on group
expect_output(print(septic_patients %>% group_by(ageplusone = as.character(age + 1)) %>% freq(ageplusone)))
})

12
tests/testthat/test-mdro.R
View File

@ -24,9 +24,9 @@ context("mdro.R")
test_that("mdro works", {
library(dplyr)
expect_error(mdro(septic_patients, country = "invalid", col_mo = "mo", info = TRUE))
expect_error(mdro(septic_patients, country = "fr", info = TRUE))
expect_error(mdro(septic_patients, country = c("de", "nl"), info = TRUE))
expect_error(suppressWarnings(mdro(septic_patients, country = "invalid", col_mo = "mo", info = TRUE)))
expect_error(suppressWarnings(mdro(septic_patients, country = "fr", info = TRUE)))
expect_error(mdro(septic_patients, guideline = c("BRMO", "MRGN"), info = TRUE))
expect_error(mdro(septic_patients, col_mo = "invalid", info = TRUE))
outcome <- mdro(septic_patients)
@ -43,7 +43,7 @@ test_that("mdro works", {
c(1969, 25, 6)) # 1969 neg, 25 unconfirmed, 6 pos
expect_equal(brmo(septic_patients, info = FALSE),
mdro(septic_patients, country = "nl", info = FALSE))
mdro(septic_patients, guideline = "BRMO", info = FALSE))
# still working on German guidelines
expect_error(suppressWarnings(mrgn(septic_patients, info = TRUE)))
@ -58,7 +58,7 @@ test_that("mdro works", {
gent = "S",
tobr = "S",
pita = "S"),
country = "nl",
guideline = "BRMO",
col_mo = "mo",
info = FALSE)),
"Negative")
@ -71,7 +71,7 @@ test_that("mdro works", {
gent = "R",
tobr = "R",
pita = "R"),
country = "nl",
guideline = "BRMO",
col_mo = "mo",
info = FALSE)),
"Positive")