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@ -38,7 +38,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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@ -375,18 +375,18 @@ names or codes, this would have worked exactly the same way:</p>
<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span></span>
<span><span class="co"># rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span></span>
<span><span class="co"># 1 R R I I S I</span></span>
<span><span class="co"># 2 S I S I R R</span></span>
<span><span class="co"># 3 R I S I R S</span></span>
<span><span class="co"># 4 I R S I I R</span></span>
<span><span class="co"># 5 R R R R S I</span></span>
<span><span class="co"># 6 R I S S I I</span></span>
<span><span class="co"># 1 I R R I R R</span></span>
<span><span class="co"># 2 I I I R S R</span></span>
<span><span class="co"># 3 I R S I I R</span></span>
<span><span class="co"># 4 I R R R S R</span></span>
<span><span class="co"># 5 S R S R I S</span></span>
<span><span class="co"># 6 R R S S R S</span></span>
<span><span class="co"># kanamycin</span></span>
<span><span class="co"># 1 S</span></span>
<span><span class="co"># 2 I</span></span>
<span><span class="co"># 3 R</span></span>
<span><span class="co"># 1 R</span></span>
<span><span class="co"># 2 R</span></span>
<span><span class="co"># 3 S</span></span>
<span><span class="co"># 4 I</span></span>
<span><span class="co"># 5 S</span></span>
<span><span class="co"># 5 R</span></span>
<span><span class="co"># 6 R</span></span></code></pre></div>
<p>We can now add the interpretation of MDR-TB to our data set. You can
use:</p>
@ -428,40 +428,40 @@ Unique: 5</p>
<tr class="odd">
<td align="left">1</td>
<td align="left">Mono-resistant</td>
<td align="right">3211</td>
<td align="right">64.22%</td>
<td align="right">3211</td>
<td align="right">64.22%</td>
<td align="right">3234</td>
<td align="right">64.68%</td>
<td align="right">3234</td>
<td align="right">64.68%</td>
</tr>
<tr class="even">
<td align="left">2</td>
<td align="left">Negative</td>
<td align="right">993</td>
<td align="right">19.86%</td>
<td align="right">4204</td>
<td align="right">84.08%</td>
<td align="right">973</td>
<td align="right">19.46%</td>
<td align="right">4207</td>
<td align="right">84.14%</td>
</tr>
<tr class="odd">
<td align="left">3</td>
<td align="left">Multi-drug-resistant</td>
<td align="right">431</td>
<td align="right">8.62%</td>
<td align="right">4635</td>
<td align="right">92.70%</td>
<td align="right">414</td>
<td align="right">8.28%</td>
<td align="right">4621</td>
<td align="right">92.42%</td>
</tr>
<tr class="even">
<td align="left">4</td>
<td align="left">Poly-resistant</td>
<td align="right">243</td>
<td align="right">4.86%</td>
<td align="right">4878</td>
<td align="right">97.56%</td>
<td align="right">284</td>
<td align="right">5.68%</td>
<td align="right">4905</td>
<td align="right">98.10%</td>
</tr>
<tr class="odd">
<td align="left">5</td>
<td align="left">Extensively drug-resistant</td>
<td align="right">122</td>
<td align="right">2.44%</td>
<td align="right">95</td>
<td align="right">1.90%</td>
<td align="right">5000</td>
<td align="right">100.00%</td>
</tr>