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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9064</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9065</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -183,43 +183,43 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] <=0.001 32 0.005 0.25 0.5 128 8 0.0625 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.0625 64 8 4 0.025 0.25 32 0.5 <=0.001</span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 256 0.0625 4 0.01 0.01 0.025 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.01 0.025 0.025 32 128 0.125 <=0.002 0.0625 0.01 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.0625 16 0.005 0.025 >=256 4 16 0.005 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.025 128 128 <=0.002 0.005 <=0.002 0.5 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 29 20 39 43 38 39 11 22 49 47 44 14 10 36 7 14 44 7 24 6 32 47 28 7 27</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 23 27 46 28 15 9 37 30 20 26 29 16 40 45 16 36 12 50 15 50 21 6 26 48 49</span>
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<span class="r-in"><span><span class="fu">random_rsi</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'rsi'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] I S I R R R R S I R S S I R I I S S R I R S S I R</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R R R R S R S R S R S I R I I I R S R R S S S R R</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 16 0.025 4 1 4 64 0.005 2 64 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 2 0.002 0.025 0.001 0.0625 64 0.5 8 0.025 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 2 0.01 16 4 0.025 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.002 0.5 4 1 1 0.002 0.0625 0.01 0.025 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.025 0.0625 0.25 0.125 0.025 0.002 0.002 0.01 0.01 0.001 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.0625 0.002 8 64 0.125 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 2 0.5 1 0.5 <=0.25 <=0.25 2 0.5 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 4 <=0.25 4 >=16 0.5 0.5 0.5 2 >=16 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] <=0.25 <=0.25 <=0.25 >=16 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 1 4 1 32 32 4 16 <=0.5 8 16 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] <=0.5 1 2 2 1 1 1 1 16 1 2 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 1 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 0.25 0.5 0.125 0.0625 0.125 2 >=4 0.5 0.0625</span>
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<span class="r-out co"><span class="r-pr">#></span> [11] >=4 >=4 0.025 0.025 0.025 2 0.0625 0.025 0.125 0.025 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 1 0.025 0.125 0.25 0.0625</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.5 1 1 0.0625 0.125 0.5 0.25 4 2 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.5 0.25 1 0.5 4 0.25 0.0625 0.25 1 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 4 1 0.25 1 2 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 43 40 12 49 41 42 44 39 47 30 11 33 9 45 36 30 50 19 50 33 40 18 50 45 38</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 31 41 17 26 46 32 8 44 42 45 41 43 43 19 13 30 50 40 28 39 28 40 8 17 20</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 14 12 14 17 11 14 12 12 17 11 13 16 16 11 17 15 15 13 14 11 13 16 12 14 12</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 17 14 12 12 17 12 14 14 13 12 14 12 16 16 12 12 13 16 14 13 16 11 15 13</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 26 25 22 25 21 25 20 16 21 17 26 24 24 22 24 21 17 16 15 25 20 22 18 16 27</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 22 27 18 27 22 23 25 19 27 22 23 22 16 20 16 17 27 17 27 23 19 19 18 18 15</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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