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(v0.8.0.9036) complete documentation rewrite

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dr. M.S. (Matthijs) Berends
2019-11-28 22:32:17 +01:00
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commit c5f00f4a9f
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27
R/ab_property.R
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@ -21,26 +21,25 @@
#' Property of an antibiotic
#'
#' Use these functions to return a specific property of an antibiotic from the \code{\link{antibiotics}} data set. All input values will be evaluated internally with \code{\link{as.ab}}.
#' @param x any (vector of) text that can be coerced to a valid microorganism code with \code{\link{as.ab}}
#' Use these functions to return a specific property of an antibiotic from the [antibiotics] data set. All input values will be evaluated internally with [as.ab()].
#' @param x any (vector of) text that can be coerced to a valid microorganism code with [as.ab()]
#' @param tolower logical to indicate whether the first character of every output should be transformed to a lower case character. This will lead to e.g. "polymyxin B" and not "polymyxin b".
#' @param property one of the column names of one of the \code{\link{antibiotics}} data set
#' @param language language of the returned text, defaults to system language (see \code{\link{get_locale}}) and can also be set with \code{\link{getOption}("AMR_locale")}. Use \code{language = NULL} or \code{language = ""} to prevent translation.
#' @param administration way of administration, either \code{"oral"} or \code{"iv"}
#' @param property one of the column names of one of the [antibiotics] data set
#' @param language language of the returned text, defaults to system language (see [get_locale()]) and can also be set with `getOption("AMR_locale")`. Use `language = NULL` or `language = ""` to prevent translation.
#' @param administration way of administration, either `"oral"` or `"iv"`
#' @param units a logical to indicate whether the units instead of the DDDs itself must be returned, see Examples
#' @param ... other parameters passed on to \code{\link{as.ab}}
#' @details All output will be \link{translate}d where possible.
#' @param ... other parameters passed on to [as.ab()]
#' @details All output will be [translate]d where possible.
#' @inheritSection as.ab Source
#' @rdname ab_property
#' @name ab_property
#' @return \itemize{
#' \item{An \code{integer} in case of \code{ab_cid}}
#' \item{A named \code{list} in case of \code{ab_info} and multiple \code{ab_synonyms}/\code{ab_tradenames}}
#' \item{A \code{double} in case of \code{ab_ddd}}
#' \item{A \code{character} in all other cases}
#' }
#' @return
#' - An [`integer`] in case of [ab_cid()]
#' - A named [`list`] in case of [ab_info()] and multiple [ab_synonyms()]/[ab_tradenames()]
#' - A [`double`] in case of [ab_ddd()]
#' - A [`character`] in all other cases
#' @export
#' @seealso \code{\link{antibiotics}}
#' @seealso [antibiotics]
#' @inheritSection AMR Read more on our website!
#' @examples
#' # all properties: