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(v0.8.0.9036) complete documentation rewrite

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dr. M.S. (Matthijs) Berends
2019-11-28 22:32:17 +01:00
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docs/reference/rsi_translation.html
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<script src="../extra.js"></script>
<meta property="og:title" content="Data set for RSI interpretation — rsi_translation" />
<meta property="og:description" content="Data set to interpret MIC and disk diffusion to RSI values. Included guidelines are CLSI (2011-2019) and EUCAST (2011-2019). Use as.rsi to transform MICs or disks measurements to RSI values." />
<meta property="og:description" content="Data set to interpret MIC and disk diffusion to RSI values. Included guidelines are CLSI (2011-2019) and EUCAST (2011-2019). Use as.rsi() to transform MICs or disks measurements to RSI values." />
<meta property="og:image" content="https://msberends.gitlab.io/AMR/logo.png" />
<meta name="twitter:card" content="summary" />
@ -85,7 +85,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">0.8.0.9033</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">0.8.0.9036</span>
</span>
</div>
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</div>
<div class="ref-description">
<p>Data set to interpret MIC and disk diffusion to RSI values. Included guidelines are CLSI (2011-2019) and EUCAST (2011-2019). Use <code><a href='as.rsi.html'>as.rsi</a></code> to transform MICs or disks measurements to RSI values.</p>
<p>Data set to interpret MIC and disk diffusion to RSI values. Included guidelines are CLSI (2011-2019) and EUCAST (2011-2019). Use <code><a href='as.rsi.html'>as.rsi()</a></code> to transform MICs or disks measurements to RSI values.</p>
</div>
<pre class="usage"><span class='no'>rsi_translation</span></pre>
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<h2 class="hasAnchor" id="format"><a class="anchor" href="#format"></a>Format</h2>
<p>A <code><a href='https://rdrr.io/r/base/data.frame.html'>data.frame</a></code> with 13,975 observations and 9 variables:</p><dl class='dl-horizontal'>
<dt><code>guideline</code></dt><dd><p>Name of the guideline</p></dd>
<dt><code>method</code></dt><dd><p>Either "MIC" or "DISK"</p></dd>
<dt><code>site</code></dt><dd><p>Body site, e.g. "Oral" or "Respiratory"</p></dd>
<dt><code>mo</code></dt><dd><p>Microbial ID, see <code><a href='as.mo.html'>as.mo</a></code></p></dd>
<dt><code>ab</code></dt><dd><p>Antibiotic ID, see <code><a href='as.ab.html'>as.ab</a></code></p></dd>
<dt><code>ref_tbl</code></dt><dd><p>Info about where the guideline rule can be found</p></dd>
<dt><code>disk_dose</code></dt><dd><p>Dose of the used disk diffusion method</p></dd>
<dt><code>breakpoint_S</code></dt><dd><p>Lowest MIC value or highest number of millimeters that leads to "S"</p></dd>
<dt><code>breakpoint_R</code></dt><dd><p>Highest MIC value or lowest number of millimeters that leads to "R"</p></dd>
</dl>
<p>A <code><a href='https://rdrr.io/r/base/data.frame.html'>data.frame</a></code> with 13,975 observations and 9 variables:</p><ul>
<li><p><code>guideline</code><br /> Name of the guideline</p></li>
<li><p><code>method</code><br /> Either "MIC" or "DISK"</p></li>
<li><p><code>site</code><br /> Body site, e.g. "Oral" or "Respiratory"</p></li>
<li><p><code>mo</code><br /> Microbial ID, see <code><a href='as.mo.html'>as.mo()</a></code></p></li>
<li><p><code>ab</code><br /> Antibiotic ID, see <code><a href='as.ab.html'>as.ab()</a></code></p></li>
<li><p><code>ref_tbl</code><br /> Info about where the guideline rule can be found</p></li>
<li><p><code>disk_dose</code><br /> Dose of the used disk diffusion method</p></li>
<li><p><code>breakpoint_S</code><br /> Lowest MIC value or highest number of millimeters that leads to "S"</p></li>
<li><p><code>breakpoint_R</code><br /> Highest MIC value or lowest number of millimeters that leads to "R"</p></li>
</ul>
<h2 class="hasAnchor" id="read-more-on-our-website-"><a class="anchor" href="#read-more-on-our-website-"></a>Read more on our website!</h2>