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(v0.8.0.9036) complete documentation rewrite

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dr. M.S. (Matthijs) Berends
2019-11-28 22:32:17 +01:00
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man/AMR.Rd
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@ -13,17 +13,17 @@ We created this package for both academic research and routine analysis at the F
This package can be used for:
\itemize{
\item{Reference for the taxonomy of microorganisms, since the package contains all microbial (sub)species from the Catalogue of Life}
\item{Interpreting raw MIC and disk diffusion values, based on the latest CLSI or EUCAST guidelines}
\item{Determining first isolates to be used for AMR analysis}
\item{Calculating antimicrobial resistance}
\item{Determining multi-drug resistance (MDR) / multi-drug resistant organisms (MDRO)}
\item{Calculating (empirical) susceptibility of both mono therapy and combination therapies}
\item{Predicting future antimicrobial resistance using regression models}
\item{Getting properties for any microorganism (like Gram stain, species, genus or family)}
\item{Getting properties for any antibiotic (like name, EARS-Net code, ATC code, PubChem code, defined daily dose or trade name)}
\item{Plotting antimicrobial resistance}
\item{Applying EUCAST expert rules}
\item Reference for the taxonomy of microorganisms, since the package contains all microbial (sub)species from the \href{http://www.catalogueoflife.org}{Catalogue of Life}
\item Interpreting raw MIC and disk diffusion values, based on the latest CLSI or EUCAST guidelines
\item Determining first isolates to be used for AMR analysis
\item Calculating antimicrobial resistance
\item Determining multi-drug resistance (MDR) / multi-drug resistant organisms (MDRO)
\item Calculating (empirical) susceptibility of both mono therapy and combination therapies
\item Predicting future antimicrobial resistance using regression models
\item Getting properties for any microorganism (like Gram stain, species, genus or family)
\item Getting properties for any antibiotic (like name, EARS-Net code, ATC code, PubChem code, defined daily dose or trade name)
\item Plotting antimicrobial resistance
\item Applying EUCAST expert rules
}
}
\section{Read more on our website!}{
@ -36,11 +36,11 @@ On our website \url{https://msberends.gitlab.io/AMR} you can find \href{https://
For suggestions, comments or questions, please contact us at:
Matthijs S. Berends \cr
m.s.berends [at] umcg [dot] nl \cr
m.s.berends \link{at} umcg \link{dot} nl \cr
Department of Medical Microbiology, University of Groningen \cr
University Medical Center Groningen \cr
Post Office Box 30001 \cr
9700 RB Groningen
9700 RB Groningen \cr
The Netherlands
If you have found a bug, please file a new issue at: \cr