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updated microorganism codes

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dr. M.S. (Matthijs) Berends
2023-05-26 16:10:01 +02:00
parent 0bcf55d3b6
commit c6135d2082
14 changed files with 59 additions and 42 deletions
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R/aa_globals.R
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@ -81,6 +81,11 @@ TAXONOMY_VERSION <- list(
citation = "Parte, AC *et al.* (2020). **List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ.** International Journal of Systematic and Evolutionary Microbiology, 70, 5607-5612; \\doi{10.1099/ijsem.0.004332}.",
url = "https://lpsn.dsmz.de"
),
BacDive = list(
accessed_date = as.Date("2023-05-12"),
citation = "Reimer, LC *et al.* (2022). ***BacDive* in 2022: the knowledge base for standardized bacterial and archaeal data.** Nucleic Acids Res., 50(D1):D741-D74; \\doi{10.1093/nar/gkab961}.",
url = "https://bacdive.dsmz.de"
),
SNOMED = list(
accessed_date = as.Date("2021-07-01"),
citation = "Public Health Information Network Vocabulary Access and Distribution System (PHIN VADS). US Edition of SNOMED CT from 1 September 2020. Value Set Name 'Microoganism', OID 2.16.840.1.114222.4.11.1009 (v12).",