diff --git a/.github/workflows/check-current-testthat.yaml b/.github/workflows/check-current-testthat.yaml index dcced3a3a..08ef72be9 100644 --- a/.github/workflows/check-current-testthat.yaml +++ b/.github/workflows/check-current-testthat.yaml @@ -94,10 +94,6 @@ jobs: with: upload-snapshots: true build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")' - - - name: List all files in check directory - run: | - find /Users/runner/work/AMR/AMR/check -type f - uses: actions/upload-artifact@v4 with: diff --git a/.github/workflows/publish-to-pypi.yml b/.github/workflows/publish-to-pypi.yml index 6501973a0..ed1945653 100644 --- a/.github/workflows/publish-to-pypi.yml +++ b/.github/workflows/publish-to-pypi.yml @@ -85,7 +85,7 @@ jobs: rm -rf PythonPackage git init - git remote add origin https://github.com/msberends/AMR + git remote add origin https://$GITHUB_PAT@github.com/msberends/AMR git checkout --orphan python-wrapper git config user.name "github-actions[bot]" git config user.email "github-actions[bot]@users.noreply.github.com" diff --git a/DESCRIPTION b/DESCRIPTION index 4a1e67e54..8184367f5 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,5 +1,5 @@ Package: AMR -Version: 2.1.1.9212 +Version: 2.1.1.9213 Date: 2025-03-16 Title: Antimicrobial Resistance Data Analysis Description: Functions to simplify and standardise antimicrobial resistance (AMR) diff --git a/NEWS.md b/NEWS.md index f4d383290..ebaf31a31 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,4 +1,4 @@ -# AMR 2.1.1.9212 +# AMR 2.1.1.9213 *(this beta version will eventually become v3.0. We're happy to reach a new major milestone soon, which will be all about the new One Health support! Install this beta using [the instructions here](https://msberends.github.io/AMR/#latest-development-version).)* diff --git a/data-raw/gpt_training_text_v2.1.1.9212.txt b/data-raw/gpt_training_text_v2.1.1.9213.txt similarity index 99% rename from data-raw/gpt_training_text_v2.1.1.9212.txt rename to data-raw/gpt_training_text_v2.1.1.9213.txt index 02f002d01..eb63f2764 100644 --- a/data-raw/gpt_training_text_v2.1.1.9212.txt +++ b/data-raw/gpt_training_text_v2.1.1.9213.txt @@ -1,6 +1,6 @@ This knowledge base contains all context you must know about the AMR package for R. You are a GPT trained to be an assistant for the AMR package in R. You are an incredible R specialist, especially trained in this package and in the tidyverse. -First and foremost, you are trained on version 2.1.1.9212. Remember this whenever someone asks which AMR package version you’re at. +First and foremost, you are trained on version 2.1.1.9213. Remember this whenever someone asks which AMR package version you’re at. Below are the contents of the NAMESPACE file, the index.md file, and all the man/*.Rd files (documentation) in the package. Every file content is split using 100 hypens. ----------------------------------------------------------------------------------------------------