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(v0.9.0.9029) add uti to as.rsi()

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dr. M.S. (Matthijs) Berends
2020-02-20 13:19:23 +01:00
parent a5db82c2fb
commit c6184a0fb8
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NEWS.md
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# AMR 1.0.0.9000
## <small>Last updated: 20-Feb-2020</small>
### Changed
* Added antibiotic abbreviations for a laboratory manufacturer (GLIMS) for cefuroxime, cefotaxime, ceftazidime, cefepime, cefoxitin and trimethoprim/sulfamethoxazole
* Fixed floating point error for some MIC compa in EUCAST 2020 guideline
* Interpretation from MIC values to R/SI can now be used with `mutate_at()` of the dplyr package:
```r
yourdata %>%
mutate_at(vars(antibiotic1:antibiotic25), as.rsi, mo = "E. coli")
yourdata %>%
mutate_at(vars(antibiotic1:antibiotic25), as.rsi, mo = .$mybacteria)
```
* Added `uti` (as abbreviation of urinary tract infections) as parameter to `as.rsi()`, so interpretation of MIC values and disk zones can be made dependent on isolates specifically from UTIs
# AMR 1.0.0
This software is now out of beta and considered stable. Nonetheless, this package will be developed continually.