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(v0.9.0.9029) add uti to as.rsi()

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dr. M.S. (Matthijs) Berends
2020-02-20 13:19:23 +01:00
parent a5db82c2fb
commit c6184a0fb8
71 changed files with 1129 additions and 800 deletions
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12
data-raw/antibiotics.txt
View File

@ -62,7 +62,7 @@
"CDR" "J01DD15" 6915944 "Cefdinir" "Cephalosporins (3rd gen.)" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "c(\"cdn\", \"cdr\", \"din\", \"cd\", \"cfd\")" "c(\"Cefdinir\", \"Cefdinirum\", \"Cefdinyl\", \"Cefdirnir\", \"Ceftinex\", \"Cefzon\", \"Omnicef\")" 0.6 "g"
"DIT" "J01DD16" 9870843 "Cefditoren" "Cephalosporins (3rd gen.)" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "cdn" "Cefditoren" 0.4 "g"
"DIX" 6437877 "Cefditoren pivoxil" "Cephalosporins (3rd gen.)" "c(\"Cefditoren\", \"Cefditoren PI voxil\", \"Cefditoren pivoxil\", \"Cefditoren Pivoxil\", \"Cefditorin\", \"CEFDITORIN PIVOXIL\", \"Meiact\", \"Spectracef\")"
"FEP" "J01DE01" 5479537 "Cefepime" "Cephalosporins (4th gen.)" "Other beta-lactam antibacterials" "Fourth-generation cephalosporins" "c(\"cpe\", \"fep\", \"pm\", \"cpm\", \"cfep\", \"xpm\")" "c(\"Axepim\", \"Cefepima\", \"Cefepime\", \"Cefepimum\", \"Cepimax\", \"Cepimex\", \"Maxcef\", \"Maxipime\")" 2 "g" "38363-8"
"FEP" "J01DE01" 5479537 "Cefepime" "Cephalosporins (4th gen.)" "Other beta-lactam antibacterials" "Fourth-generation cephalosporins" "c(\"cpe\", \"fep\", \"pm\", \"cpm\", \"cfep\", \"xpm\", \"cfpi\")" "c(\"Axepim\", \"Cefepima\", \"Cefepime\", \"Cefepimum\", \"Cepimax\", \"Cepimex\", \"Maxcef\", \"Maxipime\")" 2 "g" "38363-8"
"CPC" 9567559 "Cefepime/clavulanic acid" "Cephalosporins (4th gen.)" "xpml" ""
"FPT" 9567558 "Cefepime/tazobactam" "Cephalosporins (4th gen.)" ""
"FPZ" "Cefepime/zidebactam" "Other antibacterials" ""
@ -81,14 +81,14 @@
"CSL" "J01DD62" "Cefoperazone/sulbactam" "Cephalosporins (3rd gen.)" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "" 4 "g"
"CND" "J01DC11" 43507 "Ceforanide" "Cephalosporins (2nd gen.)" "Other beta-lactam antibacterials" "Second-generation cephalosporins" "c(\"Ceforanide\", \"Ceforanido\", \"Ceforanidum\", \"Precef\", \"Radacef\")" 4 "g"
"CSE" 9830519 "Cefoselis" "Cephalosporins (4th gen.)" "c(\"Cefoselis\", \"Cefoselis sulfate\", \"Winsef\")"
"CTX" "J01DD01" 5742673 "Cefotaxime" "Cephalosporins (3rd gen.)" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "c(\"cft\", \"ctx\", \"tax\", \"fot\", \"ct\", \"cfot\", \"xct\")" "c(\"Cefotaxim\", \"Cefotaxim Hikma\", \"Cefotaxima\", \"Cefotaxime\", \"Cefotaxime acid\", \"Cefotaximum\", \"Cephotaxime\", \"Claforan\", \"Omnatax\")" 4 "g" "c(\"25238-7\", \"3446-2\", \"80961-6\")"
"CTX" "J01DD01" 5742673 "Cefotaxime" "Cephalosporins (3rd gen.)" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "c(\"cft\", \"ctx\", \"tax\", \"fot\", \"ct\", \"cfot\", \"xct\", \"cftx\")" "c(\"Cefotaxim\", \"Cefotaxim Hikma\", \"Cefotaxima\", \"Cefotaxime\", \"Cefotaxime acid\", \"Cefotaximum\", \"Cephotaxime\", \"Claforan\", \"Omnatax\")" 4 "g" "c(\"25238-7\", \"3446-2\", \"80961-6\")"
"CTC" 9575353 "Cefotaxime/clavulanic acid" "Cephalosporins (3rd gen.)" "xctl" ""
"CTS" 9574753 "Cefotaxime/sulbactam" "Cephalosporins (3rd gen.)" ""
"CTT" "J01DC05" 53025 "Cefotetan" "Cephalosporins (2nd gen.)" "Other beta-lactam antibacterials" "Second-generation cephalosporins" "c(\"ctn\", \"ctt\", \"cte\", \"tans\", \"cn\")" "c(\"Apacef\", \"Cefotetan\", \"Cefotetan free acid\", \"Cefotetanum\")" 4 "g" "c(\"25239-5\", \"3447-0\")"
"CTF" "J01DC07" 43708 "Cefotiam" "Cephalosporins (2nd gen.)" "Other beta-lactam antibacterials" "Second-generation cephalosporins" "c(\"Cefotiam\", \"Cefotiam?\", \"Cefotiamum\", \"Ceradolan\", \"Ceradon\", \"Haloapor\")" 1.2 "g" 4 "g"
"CHE" 125846 "Cefotiam hexetil" "Cephalosporins (3rd gen.)" "c(\"Cefotiam cilexetil\", \"Pansporin T\")"
"FOV" 9578573 "Cefovecin" "Cephalosporins (3rd gen.)" ""
"FOX" "J01DC01" 441199 "Cefoxitin" "Cephalosporins (2nd gen.)" "Other beta-lactam antibacterials" "Second-generation cephalosporins" "c(\"cfx\", \"fox\", \"cx\", \"fx\", \"cfox\")" "c(\"Cefoxitin\", \"Cefoxitina\", \"Cefoxitine\", \"Cefoxitinum\", \"Cefoxotin\", \"CEPHOXITIN\", \"Mefoxin\", \"Mefoxitin\", \"Rephoxitin\")" 6 "g" "c(\"25240-3\", \"3448-8\")"
"FOX" "J01DC01" 441199 "Cefoxitin" "Cephalosporins (2nd gen.)" "Other beta-lactam antibacterials" "Second-generation cephalosporins" "c(\"cfx\", \"fox\", \"cx\", \"fx\", \"cfox\", \"cfxt\")" "c(\"Cefoxitin\", \"Cefoxitina\", \"Cefoxitine\", \"Cefoxitinum\", \"Cefoxotin\", \"CEPHOXITIN\", \"Mefoxin\", \"Mefoxitin\", \"Rephoxitin\")" 6 "g" "c(\"25240-3\", \"3448-8\")"
"ZOP" 9571080 "Cefozopran" "Cephalosporins (4th gen.)" "Cefozopran"
"CFZ" 68597 "Cefpimizole" "Cephalosporins (3rd gen.)" "c(\"Cefpimizol\", \"Cefpimizole\", \"Cefpimizole sodium\", \"Cefpimizolum\")"
"CPM" "J01DD11" 636405 "Cefpiramide" "Cephalosporins (3rd gen.)" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "c(\"Cefpiramide\", \"Cefpiramide acid\", \"Cefpiramido\", \"Cefpiramidum\")" 2 "g"
@ -103,7 +103,7 @@
"CSU" 68718 "Cefsumide" "Cephalosporins (unclassified gen.)" "c(\"Cefsumide\", \"Cefsumido\", \"Cefsumidum\")"
"CPT" "J01DI02" 56841980 "Ceftaroline" "Cephalosporins (5th gen.)" "c(\"Teflaro\", \"Zinforo\")"
"CPA" "Ceftaroline/avibactam" "Cephalosporins (5th gen.)" ""
"CAZ" "J01DD02" 5481173 "Ceftazidime" "Cephalosporins (3rd gen.)" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "c(\"caz\", \"taz\", \"tz\", \"cfta\", \"xtz\", \"cefta\")" "c(\"Ceftazidim\", \"Ceftazidima\", \"Ceftazidime\", \"CEFTAZIDIME\", \"Ceftazidimum\", \"Ceptaz\", \"Fortaz\", \"Fortum\", \"Pentacef\", \"Tazicef\", \"Tazidime\")" 4 "g" "c(\"21151-6\", \"3449-6\", \"80960-8\")"
"CAZ" "J01DD02" 5481173 "Ceftazidime" "Cephalosporins (3rd gen.)" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "c(\"caz\", \"taz\", \"tz\", \"cfta\", \"xtz\", \"cefta\", \"cftz\")" "c(\"Ceftazidim\", \"Ceftazidima\", \"Ceftazidime\", \"CEFTAZIDIME\", \"Ceftazidimum\", \"Ceptaz\", \"Fortaz\", \"Fortum\", \"Pentacef\", \"Tazicef\", \"Tazidime\")" 4 "g" "c(\"21151-6\", \"3449-6\", \"80960-8\")"
"CZA" "Ceftazidime/avibactam" "Cephalosporins (3rd gen.)" ""
"CCV" "J01DD52" 9575352 "Ceftazidime/clavulanic acid" "Cephalosporins (3rd gen.)" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "xtzl" ""
"CEM" 6537431 "Cefteram" "Cephalosporins (3rd gen.)" "c(\"Cefteram\", \"Cefterame\", \"Cefteramum\", \"Ceftetrame\")"
@ -118,7 +118,7 @@
"CEI" "J01DI54" "Ceftolozane/enzyme inhibitor" "Cephalosporins (5th gen.)" "Other beta-lactam antibacterials" "Other cephalosporins" ""
"CZT" "Ceftolozane/tazobactam" "Cephalosporins (5th gen.)" ""
"CRO" "J01DD04" 5479530 "Ceftriaxone" "Cephalosporins (3rd gen.)" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "c(\"cax\", \"cro\", \"ctr\", \"frx\", \"axo\", \"tx\", \"cftr\")" "c(\"Biotrakson\", \"Cefatriaxone\", \"Cefatriaxone hydrate\", \"Ceftriaxon\", \"Ceftriaxona\", \"Ceftriaxone\", \"CEFTRIAXONE SODIUM\", \"Ceftriaxonum\", \"Ceftriazone\", \"Cephtriaxone\", \"Longacef\", \"Rocefin\", \"Rocephalin\", \"Rocephin\", \"Rocephine\", \"Rophex\")" 2 "g" "c(\"25244-5\", \"3451-2\", \"80957-4\")"
"CXM" "J01DC02" 5479529 "Cefuroxime" "Cephalosporins (2nd gen.)" "Other beta-lactam antibacterials" "Second-generation cephalosporins" "c(\"crm\", \"cxm\", \"cfx\", \"rox\", \"fur\", \"xm\", \"cfur\")" "c(\"Biofuroksym\", \"Cefuril\", \"Cefuroxim\", \"Cefuroxime\", \"Cefuroximine\", \"Cefuroximo\", \"Cefuroximum\", \"Cephuroxime\", \"Kefurox\", \"Sharox\", \"Zinacef\", \"Zinacef Danmark\")" 0.5 "g" 3 "g" "c(\"25245-2\", \"3452-0\", \"80608-3\", \"80617-4\")"
"CXM" "J01DC02" 5479529 "Cefuroxime" "Cephalosporins (2nd gen.)" "Other beta-lactam antibacterials" "Second-generation cephalosporins" "c(\"crm\", \"cxm\", \"cfx\", \"rox\", \"fur\", \"xm\", \"cfur\", \"cfrx\")" "c(\"Biofuroksym\", \"Cefuril\", \"Cefuroxim\", \"Cefuroxime\", \"Cefuroximine\", \"Cefuroximo\", \"Cefuroximum\", \"Cephuroxime\", \"Kefurox\", \"Sharox\", \"Zinacef\", \"Zinacef Danmark\")" 0.5 "g" 3 "g" "c(\"25245-2\", \"3452-0\", \"80608-3\", \"80617-4\")"
"CXA" 6321416 "Cefuroxime axetil" "Cephalosporins (2nd gen.)" "c(\"Altacef\", \"Bioracef\", \"Cefaks\", \"Cefazine\", \"Ceftin\", \"Cefuroximaxetil\", \"Cefuroxime axetil\", \"Celocid\", \"Cepazine\", \"Cethixim\", \"Cetoxil\", \"Coliofossim\", \"Elobact\", \"Forcef\", \"Furoxime\", \"Kalcef\", \"Maxitil\", \"Medoxm\", \"Nivador\", \"Zinnat\")"
"CFM2" "J01RA03" "Cefuroxime/metronidazole" "Other antibacterials" "Combinations of antibacterials" "Combinations of antibacterials" ""
"ZON" 6336505 "Cefuzonam" "Other antibacterials" "c(\"Cefuzonam\", \"Cefuzonam sodium\", \"Cefuzoname\", \"Cefuzonamum\")"
@ -490,7 +490,7 @@
"TMP" "J01EA01" 5578 "Trimethoprim" "Trimethoprims" "Sulfonamides and trimethoprim" "Trimethoprim and derivatives" "c(\"t\", \"tmp\", \"tr\", \"w\", \"trim\")" "c(\"Abaprim\", \"Alprim\", \"Anitrim\", \"Antrima\", \"Antrimox\", \"Bacdan\", \"Bacidal\", \"Bacide\", \"Bacterial\", \"Bacticel\", \"Bactifor\", \"Bactin\", \"Bactoprim\", \"Bactramin\", \"Bactrim\", \"Bencole\", \"Bethaprim\", \"Biosulten\", \"Briscotrim\", \"Chemotrin\", \"Colizole\", \"Colizole DS\", \"Conprim\", \"Cotrimel\", \"CoTrimoxizole\", \"Deprim\", \"Dosulfin\", \"Duocide\", \"Esbesul\", \"Espectrin\", \"Euctrim\", \"Exbesul\", \"Fermagex\", \"Fortrim\", \"Idotrim\", \"Ikaprim\", \"Instalac\", \"Kombinax\", \"Lagatrim\", \"Lagatrim Forte\", \"Lastrim\", \"Lescot\",
\"Methoprim\", \"Metoprim\", \"Monoprim\", \"Monotrim\", \"Monotrimin\", \"Novotrimel\", \"Omstat\", \"Oraprim\", \"Pancidim\", \"Polytrim\", \"Priloprim\", \"Primosept\", \"Primsol\", \"Proloprim\", \"Protrin\", \"Purbal\", \"Resprim\", \"Resprim Forte\", \"Roubac\", \"Roubal\", \"Salvatrim\", \"Septrin DS\", \"Septrin Forte\", \"Septrin S\", \"Setprin\", \"Sinotrim\", \"Stopan\", \"Streptoplus\", \"Sugaprim\", \"Sulfamar\", \"Sulfamethoprim\", \"Sulfoxaprim\", \"Sulthrim\", \"Sultrex\", \"Syraprim\", \"Tiempe\", \"Tmp Smx\", \"Toprim\", \"Trimanyl\", \"Trimethioprim\", \"Trimethopim\",
\"Trimethoprim\", \"TRIMETHOPRIM\", \"Trimethoprime\", \"Trimethoprimum\", \"Trimethopriom\", \"Trimetoprim\", \"Trimetoprima\", \"Trimexazole\", \"Trimexol\", \"Trimezol\", \"Trimogal\", \"Trimono\", \"Trimopan\", \"Trimpex\", \"Triprim\", \"Trisul\", \"Trisulcom\", \"Trisulfam\", \"Trisural\", \"Uretrim\", \"Urobactrim\", \"Utetrin\", \"Velaten\", \"Wellcoprim\", \"Wellcoprin\", \"Xeroprim\", \"Zamboprim\")" 0.4 "g" 0.4 "g" "c(\"11005-6\", \"17747-7\", \"25273-4\", \"32342-8\", \"4079-0\", \"4080-8\", \"4081-6\", \"55584-7\", \"80552-3\", \"80973-1\")"
"SXT" "J01EE01" 358641 "Trimethoprim/sulfamethoxazole" "Trimethoprims" "Sulfonamides and trimethoprim" "Combinations of sulfonamides and trimethoprim, incl. derivatives" "c(\"t/s\", \"sxt\", \"ts\", \"cot\", \"trsu\")" "c(\"Bactrim\", \"Bactrimel\", \"Belcomycine\", \"Colimycin\", \"Colimycin sulphate\", \"Colisticin\", \"Colistimethate\", \"Colistimethate Sodium\", \"Colistin sulfate\", \"Colistin sulphate\", \"Colomycin\", \"Coly-Mycin\", \"Cotrimazole\", \"Cotrimoxazole\", \"Polymyxin E\", \"Polymyxin E. Sulfate\", \"Promixin\", \"Septra\", \"Totazina\")"
"SXT" "J01EE01" 358641 "Trimethoprim/sulfamethoxazole" "Trimethoprims" "Sulfonamides and trimethoprim" "Combinations of sulfonamides and trimethoprim, incl. derivatives" "c(\"t/s\", \"sxt\", \"ts\", \"cot\", \"trsu\", \"trsx\")" "c(\"Bactrim\", \"Bactrimel\", \"Belcomycine\", \"Colimycin\", \"Colimycin sulphate\", \"Colisticin\", \"Colistimethate\", \"Colistimethate Sodium\", \"Colistin sulfate\", \"Colistin sulphate\", \"Colomycin\", \"Coly-Mycin\", \"Cotrimazole\", \"Cotrimoxazole\", \"Polymyxin E\", \"Polymyxin E. Sulfate\", \"Promixin\", \"Septra\", \"Totazina\")"
"TRL" "J01FA08" 202225 "Troleandomycin" "Macrolides/lincosamides" "Macrolides, lincosamides and streptogramins" "Macrolides" "c(\"ACETYLOLEANDOMYCIN\", \"Aovine\", \"Cyclamycin\", \"Evramicina\", \"Matromicina\", \"Matromycin T\", \"Oleandocetine\", \"T.A.O.\", \"Treolmicina\", \"Tribiocillina\", \"Triocetin\", \"Triolan\", \"Troleandomicina\", \"Troleandomycin\", \"Troleandomycine\", \"Troleandomycinum\", \"Viamicina\", \"Wytrion\")" 1 "g"
"TRO" 55886 "Trospectomycin" "Other antibacterials" "c(\"Trospectinomycin\", \"Trospectomicina\", \"Trospectomycin\", \"Trospectomycine\", \"Trospectomycinum\")"
"TVA" "J01MA13" 62959 "Trovafloxacin" "Quinolones" "Quinolone antibacterials" "Fluoroquinolones" "c(\"Trovafloxacin\", \"Trovan\")" 0.2 "g" 0.2 "g"

32
data-raw/read_EUCAST.R
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@ -83,9 +83,23 @@ read_EUCAST <- function(sheet, file = "data-raw/v_10.0_Breakpoint_Tables.xlsx")
x
}
MICs_with_trailing_superscript <- c(0.0011:0.0019, 11:19, 21:29, 0.51:0.59, 41:49,
81:89, 0.031:0.039, 0.061:0.069, 0.251:0.259,
0.1251:0.1259, 161:169, 321:329)
MICs_with_trailing_superscript <- c(seq(from = 0.0011, to = 0.0019, by = 0.0001),
seq(from = 0.031, to = 0.039, by = 0.001),
seq(from = 0.061, to = 0.069, by = 0.001),
seq(from = 0.1251, to = 0.1259, by = 0.0001),
seq(from = 0.251, to = 0.259, by = 0.001),
seq(from = 0.51, to = 0.59, by = 0.01),
seq(from = 11, to = 19, by = 1),
seq(from = 161, to = 169, by = 01),
seq(from = 21, to = 29, by = 1),
seq(from = 321, to = 329, by = 1),
seq(from = 41, to = 49, by = 1),
seq(from = 81, to = 89, by = 1))
has_superscript <- function(x) {
# because due to floating point error 0.1252 is not in:
# seq(from = 0.1251, to = 0.1259, by = 0.0001)
sapply(x, function(x) any(near(x, MICs_with_trailing_superscript)))
}
has_zone_diameters <- rep(any(unlist(raw_data) %like% "zone diameter"), nrow(raw_data))
@ -101,7 +115,8 @@ read_EUCAST <- function(sheet, file = "data-raw/v_10.0_Breakpoint_Tables.xlsx")
filter(!is.na(drug),
!(is.na(MIC_S) & is.na(MIC_R) & is.na(disk_S) & is.na(disk_R)),
!MIC_S %like% "(MIC|S ≤|note)",
drug != MIC_S) %>%
!MIC_S %like% "^[-]",
drug != MIC_S,) %>%
mutate(administration = case_when(drug %like% "[( ]oral" ~ "oral",
drug %like% "[( ]iv" ~ "iv",
TRUE ~ NA_character_),
@ -120,12 +135,15 @@ read_EUCAST <- function(sheet, file = "data-raw/v_10.0_Breakpoint_Tables.xlsx")
disk_S = clean_integer(disk_S),
disk_R = clean_integer(disk_R),
# invalid MIC values have a superscript text, delete those
MIC_S = ifelse(MIC_S %in% MICs_with_trailing_superscript,
MIC_S = ifelse(has_superscript(MIC_S),
substr(MIC_S, 1, nchar(MIC_S) - 1),
MIC_S),
MIC_R = ifelse(MIC_R %in% MICs_with_trailing_superscript,
MIC_R = ifelse(has_superscript(MIC_R),
substr(MIC_R, 1, nchar(MIC_R) - 1),
MIC_R)
MIC_R),
# and some are just awful
MIC_S = ifelse(MIC_S == 43.4, 4, MIC_S),
MIC_R = ifelse(MIC_R == 43.4, 4, MIC_R),
) %>%
# clean drug names
mutate(drug = gsub(" ?[(, ].*$", "", drug),

7
data-raw/reproduction_of_antibiotics.R
View File

@ -317,6 +317,13 @@ antibiotics <- filter(antibiotics, ab != "PME")
antibiotics[which(antibiotics$ab == "PVM1"), "ab"] <- "PME"
# Remove Sinecatechins
antibiotics <- filter(antibiotics, ab != "SNC")
# GLIMS codes
antibiotics[which(antibiotics$ab == as.ab("cefuroxim")), "abbreviations"][[1]] <- list(c(antibiotics[which(antibiotics$ab == as.ab("cefuroxim")), "abbreviations"][[1]], "cfrx"))
antibiotics[which(antibiotics$ab == as.ab("cefotaxim")), "abbreviations"][[1]] <- list(c(antibiotics[which(antibiotics$ab == as.ab("cefotaxim")), "abbreviations"][[1]], "cftx"))
antibiotics[which(antibiotics$ab == as.ab("ceftazidime")), "abbreviations"][[1]] <- list(c(antibiotics[which(antibiotics$ab == as.ab("ceftazidime")), "abbreviations"][[1]], "cftz"))
antibiotics[which(antibiotics$ab == as.ab("cefepime")), "abbreviations"][[1]] <- list(c(antibiotics[which(antibiotics$ab == as.ab("cefepime")), "abbreviations"][[1]], "cfpi"))
antibiotics[which(antibiotics$ab == as.ab("cefoxitin")), "abbreviations"][[1]] <- list(c(antibiotics[which(antibiotics$ab == as.ab("cefoxitin")), "abbreviations"][[1]], "cfxt"))
antibiotics[which(antibiotics$ab == as.ab("cotrimoxazol")), "abbreviations"][[1]] <- list(c(antibiotics[which(antibiotics$ab == as.ab("cotrimoxazol")), "abbreviations"][[1]], "trsx"))
# ESBL E-test codes:
antibiotics[which(antibiotics$ab == "CCV"), "abbreviations"][[1]] <- list(c("xtzl"))
antibiotics[which(antibiotics$ab == "CAZ"), "abbreviations"][[1]] <- list(c(antibiotics[which(antibiotics$ab == "CAZ"), "abbreviations"][[1]], "xtz", "cefta"))

4
data-raw/reproduction_of_rsi_translation.R
View File

@ -21,7 +21,9 @@ rsi_translation <- DRGLST1 %>%
R_disk = as.disk(DISK_R),
S_mic = as.mic(MIC_S),
R_mic = as.mic(MIC_R)) %>%
filter(!is.na(mo) & !is.na(ab) & !mo %in% c("UNKNOWN", "B_GRAMN", "B_GRAMP", "F_FUNGUS", "F_YEAST")) %>%
filter(!is.na(mo),
!is.na(ab),
!mo %in% c("UNKNOWN", "B_GRAMN", "B_GRAMP", "F_FUNGUS", "F_YEAST")) %>%
arrange(desc(guideline), mo, ab)
print(mo_failures())

194
data-raw/rsi_translation.txt
View File

@ -19,7 +19,7 @@
"EUCAST 2020" "DISK" "iv" "Haemophilus influenzae" "Amoxicillin/clavulanic acid" "H.influenzae" "2-1ug" 15 15 FALSE
"EUCAST 2020" "DISK" "oral" "Haemophilus influenzae" "Amoxicillin/clavulanic acid" "H.influenzae" "2-1ug" 50 15 FALSE
"EUCAST 2020" "MIC" "iv" "Haemophilus influenzae" "Amoxicillin/clavulanic acid" "H.influenzae" 2 2 FALSE
"EUCAST 2020" "MIC" "oral" "Haemophilus influenzae" "Amoxicillin/clavulanic acid" "H.influenzae" 0.0015 2 FALSE
"EUCAST 2020" "MIC" "oral" "Haemophilus influenzae" "Amoxicillin/clavulanic acid" "H.influenzae" 0.001 2 FALSE
"EUCAST 2020" "MIC" "Lactobacillus" "Amoxicillin/clavulanic acid" "Anaerobes, Grampositive" 4 8 FALSE
"EUCAST 2020" "MIC" "Mobiluncus" "Amoxicillin/clavulanic acid" "Anaerobes, Gramnegative" 4 8 FALSE
"EUCAST 2020" "DISK" "Moraxella catarrhalis" "Amoxicillin/clavulanic acid" "M.catarrhalis" "2-1ug" 19 19 FALSE
@ -70,12 +70,11 @@
"EUCAST 2020" "MIC" "Fusobacterium" "Ampicillin" "Anaerobes, Gramnegative" 0.5 2 FALSE
"EUCAST 2020" "DISK" "Haemophilus influenzae" "Ampicillin" "H.influenzae" "2ug" 18 18 FALSE
"EUCAST 2020" "MIC" "Haemophilus influenzae" "Ampicillin" "H.influenzae" 1 1 FALSE
"EUCAST 2020" "MIC" "Kingella kingae" "Ampicillin" "K.kingae" 0.062 0.062 FALSE
"EUCAST 2020" "MIC" "Kingella kingae" "Ampicillin" "K.kingae" 0.06 0.06 FALSE
"EUCAST 2020" "MIC" "Lactobacillus" "Ampicillin" "Anaerobes, Grampositive" 4 8 FALSE
"EUCAST 2020" "DISK" "iv" "Listeria monocytogenes" "Ampicillin" "L.monocytogenes" "2ug" 16 16 FALSE
"EUCAST 2020" "MIC" "iv" "Listeria monocytogenes" "Ampicillin" "L.monocytogenes" 1 1 FALSE
"EUCAST 2020" "MIC" "Mobiluncus" "Ampicillin" "Anaerobes, Gramnegative" 0.5 2 FALSE
"EUCAST 2020" "MIC" "Moraxella catarrhalis" "Ampicillin" "M.catarrhalis" -1 -1 FALSE
"EUCAST 2020" "MIC" "Neisseria meningitidis" "Ampicillin" "N.meningitidis" 0.125 1 FALSE
"EUCAST 2020" "MIC" "Parabacteroides" "Ampicillin" "Anaerobes, Gramnegative" 0.5 2 FALSE
"EUCAST 2020" "MIC" "Porphyromonas" "Ampicillin" "Anaerobes, Gramnegative" 0.5 2 FALSE
@ -103,10 +102,9 @@
"EUCAST 2020" "MIC" "oral" "Helicobacter pylori" "Amoxicillin" "H.pylori" 0.125 0.125 FALSE
"EUCAST 2020" "MIC" "iv" "Haemophilus influenzae" "Amoxicillin" "H.influenzae" 2 2 FALSE
"EUCAST 2020" "MIC" "oral" "Haemophilus influenzae" "Amoxicillin" "H.influenzae" 0.001 2 FALSE
"EUCAST 2020" "MIC" "Kingella kingae" "Amoxicillin" "K.kingae" 0.1252 0.1252 FALSE
"EUCAST 2020" "MIC" "Kingella kingae" "Amoxicillin" "K.kingae" 0.125 0.125 FALSE
"EUCAST 2020" "MIC" "Lactobacillus" "Amoxicillin" "Anaerobes, Grampositive" 4 8 FALSE
"EUCAST 2020" "MIC" "Mobiluncus" "Amoxicillin" "Anaerobes, Gramnegative" 0.5 2 FALSE
"EUCAST 2020" "MIC" "Moraxella catarrhalis" "Amoxicillin" "M.catarrhalis" -1 -1 FALSE
"EUCAST 2020" "MIC" "Neisseria meningitidis" "Amoxicillin" "N.meningitidis" 0.125 1 FALSE
"EUCAST 2020" "MIC" "Parabacteroides" "Amoxicillin" "Anaerobes, Gramnegative" 0.5 2 FALSE
"EUCAST 2020" "MIC" "Porphyromonas" "Amoxicillin" "Anaerobes, Gramnegative" 0.5 2 FALSE
@ -465,29 +463,29 @@
"EUCAST 2020" "MIC" "Haemophilus influenzae" "Ceftolozane/tazobactam" "H.influenzae" 0.5 0.5 FALSE
"EUCAST 2020" "DISK" "Pseudomonas aeruginosa" "Ceftolozane/tazobactam" "Pseudomonas" "30-10ug" 24 24 FALSE
"EUCAST 2020" "MIC" "Pseudomonas aeruginosa" "Ceftolozane/tazobactam" "Pseudomonas" 4 4 FALSE
"EUCAST 2020" "MIC" "(unknown name)" "Ceftolozane/tazobactam" "PK PD breakpoints" 43.4 43.4 FALSE
"EUCAST 2020" "MIC" "Staphylococcus" "Dalbavancin" "Staphylococcus" 0.125 0.1253 FALSE
"EUCAST 2020" "MIC" "Streptococcus agalactiae" "Dalbavancin" "Streptococcus A,B,C,G" 0.125 0.1252 FALSE
"EUCAST 2020" "MIC" "Streptococcus anginosus" "Dalbavancin" "Streptococcus A,B,C,G" 0.125 0.1252 FALSE
"EUCAST 2020" "MIC" "Streptococcus anginosus" "Dalbavancin" "Viridans group streptococci" 0.125 0.1252 FALSE
"EUCAST 2020" "MIC" "Streptococcus dysgalactiae" "Dalbavancin" "Streptococcus A,B,C,G" 0.125 0.1252 FALSE
"EUCAST 2020" "MIC" "Streptococcus dysgalactiae dysgalactiae" "Dalbavancin" "Streptococcus A,B,C,G" 0.125 0.1252 FALSE
"EUCAST 2020" "MIC" "Streptococcus dysgalactiae equisimilis" "Dalbavancin" "Streptococcus A,B,C,G" 0.125 0.1252 FALSE
"EUCAST 2020" "MIC" "Streptococcus equi" "Dalbavancin" "Streptococcus A,B,C,G" 0.125 0.1252 FALSE
"EUCAST 2020" "MIC" "Streptococcus equi equi" "Dalbavancin" "Streptococcus A,B,C,G" 0.125 0.1252 FALSE
"EUCAST 2020" "MIC" "Streptococcus equi ruminatorum" "Dalbavancin" "Streptococcus A,B,C,G" 0.125 0.1252 FALSE
"EUCAST 2020" "MIC" "Streptococcus equi zooepidemicus" "Dalbavancin" "Streptococcus A,B,C,G" 0.125 0.1252 FALSE
"EUCAST 2020" "MIC" "Streptococcus group A" "Dalbavancin" "Streptococcus A,B,C,G" 0.125 0.1252 FALSE
"EUCAST 2020" "MIC" "Streptococcus group B" "Dalbavancin" "Streptococcus A,B,C,G" 0.125 0.1252 FALSE
"EUCAST 2020" "MIC" "Streptococcus group C" "Dalbavancin" "Streptococcus A,B,C,G" 0.125 0.1252 FALSE
"EUCAST 2020" "MIC" "Streptococcus group D" "Dalbavancin" "Streptococcus A,B,C,G" 0.125 0.1252 FALSE
"EUCAST 2020" "MIC" "Streptococcus group F" "Dalbavancin" "Streptococcus A,B,C,G" 0.125 0.1252 FALSE
"EUCAST 2020" "MIC" "Streptococcus group G" "Dalbavancin" "Streptococcus A,B,C,G" 0.125 0.1252 FALSE
"EUCAST 2020" "MIC" "Streptococcus group H" "Dalbavancin" "Streptococcus A,B,C,G" 0.125 0.1252 FALSE
"EUCAST 2020" "MIC" "Streptococcus group K" "Dalbavancin" "Streptococcus A,B,C,G" 0.125 0.1252 FALSE
"EUCAST 2020" "MIC" "Streptococcus pyogenes" "Dalbavancin" "Streptococcus A,B,C,G" 0.125 0.1252 FALSE
"EUCAST 2020" "MIC" "Streptococcus salivarius" "Dalbavancin" "Streptococcus A,B,C,G" 0.125 0.1252 FALSE
"EUCAST 2020" "MIC" "Streptococcus sanguinis" "Dalbavancin" "Streptococcus A,B,C,G" 0.125 0.1252 FALSE
"EUCAST 2020" "MIC" "(unknown name)" "Ceftolozane/tazobactam" "PK PD breakpoints" 4 4 FALSE
"EUCAST 2020" "MIC" "Staphylococcus" "Dalbavancin" "Staphylococcus" 0.125 0.125 FALSE
"EUCAST 2020" "MIC" "Streptococcus agalactiae" "Dalbavancin" "Streptococcus A,B,C,G" 0.125 0.125 FALSE
"EUCAST 2020" "MIC" "Streptococcus anginosus" "Dalbavancin" "Streptococcus A,B,C,G" 0.125 0.125 FALSE
"EUCAST 2020" "MIC" "Streptococcus anginosus" "Dalbavancin" "Viridans group streptococci" 0.125 0.125 FALSE
"EUCAST 2020" "MIC" "Streptococcus dysgalactiae" "Dalbavancin" "Streptococcus A,B,C,G" 0.125 0.125 FALSE
"EUCAST 2020" "MIC" "Streptococcus dysgalactiae dysgalactiae" "Dalbavancin" "Streptococcus A,B,C,G" 0.125 0.125 FALSE
"EUCAST 2020" "MIC" "Streptococcus dysgalactiae equisimilis" "Dalbavancin" "Streptococcus A,B,C,G" 0.125 0.125 FALSE
"EUCAST 2020" "MIC" "Streptococcus equi" "Dalbavancin" "Streptococcus A,B,C,G" 0.125 0.125 FALSE
"EUCAST 2020" "MIC" "Streptococcus equi equi" "Dalbavancin" "Streptococcus A,B,C,G" 0.125 0.125 FALSE
"EUCAST 2020" "MIC" "Streptococcus equi ruminatorum" "Dalbavancin" "Streptococcus A,B,C,G" 0.125 0.125 FALSE
"EUCAST 2020" "MIC" "Streptococcus equi zooepidemicus" "Dalbavancin" "Streptococcus A,B,C,G" 0.125 0.125 FALSE
"EUCAST 2020" "MIC" "Streptococcus group A" "Dalbavancin" "Streptococcus A,B,C,G" 0.125 0.125 FALSE
"EUCAST 2020" "MIC" "Streptococcus group B" "Dalbavancin" "Streptococcus A,B,C,G" 0.125 0.125 FALSE
"EUCAST 2020" "MIC" "Streptococcus group C" "Dalbavancin" "Streptococcus A,B,C,G" 0.125 0.125 FALSE
"EUCAST 2020" "MIC" "Streptococcus group D" "Dalbavancin" "Streptococcus A,B,C,G" 0.125 0.125 FALSE
"EUCAST 2020" "MIC" "Streptococcus group F" "Dalbavancin" "Streptococcus A,B,C,G" 0.125 0.125 FALSE
"EUCAST 2020" "MIC" "Streptococcus group G" "Dalbavancin" "Streptococcus A,B,C,G" 0.125 0.125 FALSE
"EUCAST 2020" "MIC" "Streptococcus group H" "Dalbavancin" "Streptococcus A,B,C,G" 0.125 0.125 FALSE
"EUCAST 2020" "MIC" "Streptococcus group K" "Dalbavancin" "Streptococcus A,B,C,G" 0.125 0.125 FALSE
"EUCAST 2020" "MIC" "Streptococcus pyogenes" "Dalbavancin" "Streptococcus A,B,C,G" 0.125 0.125 FALSE
"EUCAST 2020" "MIC" "Streptococcus salivarius" "Dalbavancin" "Streptococcus A,B,C,G" 0.125 0.125 FALSE
"EUCAST 2020" "MIC" "Streptococcus sanguinis" "Dalbavancin" "Streptococcus A,B,C,G" 0.125 0.125 FALSE
"EUCAST 2020" "MIC" "(unknown name)" "Dalbavancin" "PK PD breakpoints" 0.25 0.25 FALSE
"EUCAST 2020" "MIC" "Staphylococcus" "Daptomycin" "Staphylococcus" 1 1 FALSE
"EUCAST 2020" "MIC" "Streptococcus agalactiae" "Daptomycin" "Streptococcus A,B,C,G" 1 1 FALSE
@ -671,7 +669,6 @@
"EUCAST 2020" "MIC" "iv" "Enterobacterales" "Fosfomycin" "Enterobacterales" 32 32 FALSE
"EUCAST 2020" "MIC" "UTI" "Enterobacterales" "Fosfomycin" "Enterobacterales" 32 32 TRUE
"EUCAST 2020" "MIC" "iv" "Staphylococcus" "Fosfomycin" "Staphylococcus" 32 32 FALSE
"EUCAST 2020" "MIC" "Clostridium difficile" "Fusidic acid" "C.difficile" -3 -3 FALSE
"EUCAST 2020" "DISK" "Staphylococcus" "Fusidic acid" "Staphylococcus" "10ug" 24 24 FALSE
"EUCAST 2020" "MIC" "Staphylococcus" "Fusidic acid" "Staphylococcus" 1 1 FALSE
"EUCAST 2020" "DISK" "Systemic" "Enterobacterales" "Gentamicin" "Enterobacterales" "10ug" 17 17 FALSE
@ -928,7 +925,6 @@
"EUCAST 2020" "MIC" "Enterobacterales" "Moxifloxacin" "Enterobacterales" 0.25 0.25 FALSE
"EUCAST 2020" "DISK" "Corynebacterium" "Moxifloxacin" "Corynebacterium" "5ug" 25 25 FALSE
"EUCAST 2020" "MIC" "Corynebacterium" "Moxifloxacin" "Corynebacterium" 0.5 0.5 FALSE
"EUCAST 2020" "MIC" "Clostridium difficile" "Moxifloxacin" "C.difficile" -1 -1 FALSE
"EUCAST 2020" "DISK" "Haemophilus influenzae" "Moxifloxacin" "H.influenzae" "5ug" 28 28 FALSE
"EUCAST 2020" "MIC" "Haemophilus influenzae" "Moxifloxacin" "H.influenzae" 0.125 0.125 FALSE
"EUCAST 2020" "DISK" "Moraxella catarrhalis" "Moxifloxacin" "M.catarrhalis" "5ug" 26 26 FALSE
@ -1076,28 +1072,28 @@
"EUCAST 2020" "DISK" "Staphylococcus aureus" "Ofloxacin" "Staphylococcus" "5ug" 50 20 FALSE
"EUCAST 2020" "MIC" "Staphylococcus aureus" "Ofloxacin" "Staphylococcus" 0.001 1 FALSE
"EUCAST 2020" "MIC" "(unknown name)" "Ofloxacin" "PK PD breakpoints" 0.25 0.5 FALSE
"EUCAST 2020" "MIC" "Staphylococcus aureus" "Oritavancin" "Staphylococcus" 0.125 0.1253 FALSE
"EUCAST 2020" "MIC" "Streptococcus agalactiae" "Oritavancin" "Streptococcus A,B,C,G" 0.25 0.252 FALSE
"EUCAST 2020" "MIC" "Streptococcus anginosus" "Oritavancin" "Streptococcus A,B,C,G" 0.25 0.252 FALSE
"EUCAST 2020" "MIC" "Streptococcus anginosus" "Oritavancin" "Viridans group streptococci" 0.25 0.252 FALSE
"EUCAST 2020" "MIC" "Streptococcus dysgalactiae" "Oritavancin" "Streptococcus A,B,C,G" 0.25 0.252 FALSE
"EUCAST 2020" "MIC" "Streptococcus dysgalactiae dysgalactiae" "Oritavancin" "Streptococcus A,B,C,G" 0.25 0.252 FALSE
"EUCAST 2020" "MIC" "Streptococcus dysgalactiae equisimilis" "Oritavancin" "Streptococcus A,B,C,G" 0.25 0.252 FALSE
"EUCAST 2020" "MIC" "Streptococcus equi" "Oritavancin" "Streptococcus A,B,C,G" 0.25 0.252 FALSE
"EUCAST 2020" "MIC" "Streptococcus equi equi" "Oritavancin" "Streptococcus A,B,C,G" 0.25 0.252 FALSE
"EUCAST 2020" "MIC" "Streptococcus equi ruminatorum" "Oritavancin" "Streptococcus A,B,C,G" 0.25 0.252 FALSE
"EUCAST 2020" "MIC" "Streptococcus equi zooepidemicus" "Oritavancin" "Streptococcus A,B,C,G" 0.25 0.252 FALSE
"EUCAST 2020" "MIC" "Streptococcus group A" "Oritavancin" "Streptococcus A,B,C,G" 0.25 0.252 FALSE
"EUCAST 2020" "MIC" "Streptococcus group B" "Oritavancin" "Streptococcus A,B,C,G" 0.25 0.252 FALSE
"EUCAST 2020" "MIC" "Streptococcus group C" "Oritavancin" "Streptococcus A,B,C,G" 0.25 0.252 FALSE
"EUCAST 2020" "MIC" "Streptococcus group D" "Oritavancin" "Streptococcus A,B,C,G" 0.25 0.252 FALSE
"EUCAST 2020" "MIC" "Streptococcus group F" "Oritavancin" "Streptococcus A,B,C,G" 0.25 0.252 FALSE
"EUCAST 2020" "MIC" "Streptococcus group G" "Oritavancin" "Streptococcus A,B,C,G" 0.25 0.252 FALSE
"EUCAST 2020" "MIC" "Streptococcus group H" "Oritavancin" "Streptococcus A,B,C,G" 0.25 0.252 FALSE
"EUCAST 2020" "MIC" "Streptococcus group K" "Oritavancin" "Streptococcus A,B,C,G" 0.25 0.252 FALSE
"EUCAST 2020" "MIC" "Streptococcus pyogenes" "Oritavancin" "Streptococcus A,B,C,G" 0.25 0.252 FALSE
"EUCAST 2020" "MIC" "Streptococcus salivarius" "Oritavancin" "Streptococcus A,B,C,G" 0.25 0.252 FALSE
"EUCAST 2020" "MIC" "Streptococcus sanguinis" "Oritavancin" "Streptococcus A,B,C,G" 0.25 0.252 FALSE
"EUCAST 2020" "MIC" "Staphylococcus aureus" "Oritavancin" "Staphylococcus" 0.125 0.125 FALSE
"EUCAST 2020" "MIC" "Streptococcus agalactiae" "Oritavancin" "Streptococcus A,B,C,G" 0.25 0.25 FALSE
"EUCAST 2020" "MIC" "Streptococcus anginosus" "Oritavancin" "Streptococcus A,B,C,G" 0.25 0.25 FALSE
"EUCAST 2020" "MIC" "Streptococcus anginosus" "Oritavancin" "Viridans group streptococci" 0.25 0.25 FALSE
"EUCAST 2020" "MIC" "Streptococcus dysgalactiae" "Oritavancin" "Streptococcus A,B,C,G" 0.25 0.25 FALSE
"EUCAST 2020" "MIC" "Streptococcus dysgalactiae dysgalactiae" "Oritavancin" "Streptococcus A,B,C,G" 0.25 0.25 FALSE
"EUCAST 2020" "MIC" "Streptococcus dysgalactiae equisimilis" "Oritavancin" "Streptococcus A,B,C,G" 0.25 0.25 FALSE
"EUCAST 2020" "MIC" "Streptococcus equi" "Oritavancin" "Streptococcus A,B,C,G" 0.25 0.25 FALSE
"EUCAST 2020" "MIC" "Streptococcus equi equi" "Oritavancin" "Streptococcus A,B,C,G" 0.25 0.25 FALSE
"EUCAST 2020" "MIC" "Streptococcus equi ruminatorum" "Oritavancin" "Streptococcus A,B,C,G" 0.25 0.25 FALSE
"EUCAST 2020" "MIC" "Streptococcus equi zooepidemicus" "Oritavancin" "Streptococcus A,B,C,G" 0.25 0.25 FALSE
"EUCAST 2020" "MIC" "Streptococcus group A" "Oritavancin" "Streptococcus A,B,C,G" 0.25 0.25 FALSE
"EUCAST 2020" "MIC" "Streptococcus group B" "Oritavancin" "Streptococcus A,B,C,G" 0.25 0.25 FALSE
"EUCAST 2020" "MIC" "Streptococcus group C" "Oritavancin" "Streptococcus A,B,C,G" 0.25 0.25 FALSE
"EUCAST 2020" "MIC" "Streptococcus group D" "Oritavancin" "Streptococcus A,B,C,G" 0.25 0.25 FALSE
"EUCAST 2020" "MIC" "Streptococcus group F" "Oritavancin" "Streptococcus A,B,C,G" 0.25 0.25 FALSE
"EUCAST 2020" "MIC" "Streptococcus group G" "Oritavancin" "Streptococcus A,B,C,G" 0.25 0.25 FALSE
"EUCAST 2020" "MIC" "Streptococcus group H" "Oritavancin" "Streptococcus A,B,C,G" 0.25 0.25 FALSE
"EUCAST 2020" "MIC" "Streptococcus group K" "Oritavancin" "Streptococcus A,B,C,G" 0.25 0.25 FALSE
"EUCAST 2020" "MIC" "Streptococcus pyogenes" "Oritavancin" "Streptococcus A,B,C,G" 0.25 0.25 FALSE
"EUCAST 2020" "MIC" "Streptococcus salivarius" "Oritavancin" "Streptococcus A,B,C,G" 0.25 0.25 FALSE
"EUCAST 2020" "MIC" "Streptococcus sanguinis" "Oritavancin" "Streptococcus A,B,C,G" 0.25 0.25 FALSE
"EUCAST 2020" "MIC" "(unknown name)" "Oritavancin" "PK PD breakpoints" 0.125 0.125 FALSE
"EUCAST 2020" "DISK" "Aerococcus sanguinicola" "Penicillin G" "A.sanguinicola_A.urinae" "1ug" 21 21 FALSE
"EUCAST 2020" "MIC" "Aerococcus sanguinicola" "Penicillin G" "A.sanguinicola_A.urinae" 0.125 0.125 FALSE
@ -1192,7 +1188,6 @@
"EUCAST 2020" "MIC" "Fusobacterium" "Piperacillin" "Anaerobes, Gramnegative" 1 1 FALSE
"EUCAST 2020" "MIC" "Lactobacillus" "Piperacillin" "Anaerobes, Grampositive" 8 1 FALSE
"EUCAST 2020" "MIC" "Mobiluncus" "Piperacillin" "Anaerobes, Gramnegative" 1 1 FALSE
"EUCAST 2020" "MIC" "Moraxella catarrhalis" "Piperacillin" "M.catarrhalis" -1 -1 FALSE
"EUCAST 2020" "MIC" "Parabacteroides" "Piperacillin" "Anaerobes, Gramnegative" 1 1 FALSE
"EUCAST 2020" "MIC" "Porphyromonas" "Piperacillin" "Anaerobes, Gramnegative" 1 1 FALSE
"EUCAST 2020" "MIC" "Propionibacterium" "Piperacillin" "Anaerobes, Grampositive" 8 1 FALSE
@ -1211,7 +1206,6 @@
"EUCAST 2020" "MIC" "Aerococcus urinae" "Rifampicin" "A.sanguinicola_A.urinae" 0.125 0.125 FALSE
"EUCAST 2020" "DISK" "Corynebacterium" "Rifampicin" "Corynebacterium" "5ug" 30 25 FALSE
"EUCAST 2020" "MIC" "Corynebacterium" "Rifampicin" "Corynebacterium" 0.06 0.5 FALSE
"EUCAST 2020" "MIC" "Clostridium difficile" "Rifampicin" "C.difficile" -6 -6 FALSE
"EUCAST 2020" "MIC" "Helicobacter pylori" "Rifampicin" "H.pylori" 1 1 FALSE
"EUCAST 2020" "DISK" "Haemophilus influenzae" "Rifampicin" "H.influenzae" "5ug" 18 18 FALSE
"EUCAST 2020" "MIC" "Haemophilus influenzae" "Rifampicin" "H.influenzae" 1 1 FALSE
@ -1392,7 +1386,7 @@
"EUCAST 2020" "MIC" "Propionibacterium" "Ticarcillin/clavulanic acid" "Anaerobes, Grampositive" 8 16 FALSE
"EUCAST 2020" "MIC" "Prevotella" "Ticarcillin/clavulanic acid" "Anaerobes, Gramnegative" 8 16 FALSE
"EUCAST 2020" "DISK" "Pseudomonas" "Ticarcillin/clavulanic acid" "Pseudomonas" "75-10ug" 50 18 FALSE
"EUCAST 2020" "MIC" "Pseudomonas" "Ticarcillin/clavulanic acid" "Pseudomonas" 0.0012 16 FALSE
"EUCAST 2020" "MIC" "Pseudomonas" "Ticarcillin/clavulanic acid" "Pseudomonas" 0.001 16 FALSE
"EUCAST 2020" "MIC" "Staphylococcus saccharolyticus" "Ticarcillin/clavulanic acid" "Anaerobes, Grampositive" 8 16 FALSE
"EUCAST 2020" "MIC" "(unknown name)" "Ticarcillin/clavulanic acid" "PK PD breakpoints" 8 16 FALSE
"EUCAST 2020" "DISK" "Campylobacter coli" "Tetracycline" "C.jejuni_C.coli" "30ug" 30 30 FALSE
@ -1505,53 +1499,53 @@
"EUCAST 2020" "DISK" "Citrobacter koseri" "Tigecycline" "Enterobacterales" "15ug" 18 18 FALSE
"EUCAST 2020" "MIC" "Citrobacter koseri" "Tigecycline" "Enterobacterales" 0.5 0.5 FALSE
"EUCAST 2020" "DISK" "Enterococcus faecium" "Tigecycline" "Enterococcus" "15ug" 22 22 FALSE
"EUCAST 2020" "MIC" "Enterococcus faecium" "Tigecycline" "Enterococcus" 0.252 0.252 FALSE
"EUCAST 2020" "MIC" "Enterococcus faecium" "Tigecycline" "Enterococcus" 0.25 0.25 FALSE
"EUCAST 2020" "DISK" "Enterococcus faecalis" "Tigecycline" "Enterococcus" "15ug" 20 20 FALSE
"EUCAST 2020" "MIC" "Enterococcus faecalis" "Tigecycline" "Enterococcus" 0.252 0.252 FALSE
"EUCAST 2020" "MIC" "Enterococcus faecalis" "Tigecycline" "Enterococcus" 0.25 0.25 FALSE
"EUCAST 2020" "DISK" "Escherichia coli" "Tigecycline" "Enterobacterales" "15ug" 18 18 FALSE
"EUCAST 2020" "MIC" "Escherichia coli" "Tigecycline" "Enterobacterales" 0.5 0.5 FALSE
"EUCAST 2020" "DISK" "Staphylococcus" "Tigecycline" "Staphylococcus" "15ug" 19 19 FALSE
"EUCAST 2020" "MIC" "Staphylococcus" "Tigecycline" "Staphylococcus" 0.53 0.53 FALSE
"EUCAST 2020" "MIC" "Staphylococcus" "Tigecycline" "Staphylococcus" 0.5 0.5 FALSE
"EUCAST 2020" "DISK" "Streptococcus agalactiae" "Tigecycline" "Streptococcus A,B,C,G" "15ug" 19 19 FALSE
"EUCAST 2020" "MIC" "Streptococcus agalactiae" "Tigecycline" "Streptococcus A,B,C,G" 0.1253 0.1253 FALSE
"EUCAST 2020" "MIC" "Streptococcus agalactiae" "Tigecycline" "Streptococcus A,B,C,G" 0.125 0.125 FALSE
"EUCAST 2020" "DISK" "Streptococcus anginosus" "Tigecycline" "Streptococcus A,B,C,G" "15ug" 19 19 FALSE
"EUCAST 2020" "MIC" "Streptococcus anginosus" "Tigecycline" "Streptococcus A,B,C,G" 0.1253 0.1253 FALSE
"EUCAST 2020" "MIC" "Streptococcus anginosus" "Tigecycline" "Streptococcus A,B,C,G" 0.125 0.125 FALSE
"EUCAST 2020" "DISK" "Streptococcus dysgalactiae" "Tigecycline" "Streptococcus A,B,C,G" "15ug" 19 19 FALSE
"EUCAST 2020" "MIC" "Streptococcus dysgalactiae" "Tigecycline" "Streptococcus A,B,C,G" 0.1253 0.1253 FALSE
"EUCAST 2020" "MIC" "Streptococcus dysgalactiae" "Tigecycline" "Streptococcus A,B,C,G" 0.125 0.125 FALSE
"EUCAST 2020" "DISK" "Streptococcus dysgalactiae dysgalactiae" "Tigecycline" "Streptococcus A,B,C,G" "15ug" 19 19 FALSE
"EUCAST 2020" "MIC" "Streptococcus dysgalactiae dysgalactiae" "Tigecycline" "Streptococcus A,B,C,G" 0.1253 0.1253 FALSE
"EUCAST 2020" "MIC" "Streptococcus dysgalactiae dysgalactiae" "Tigecycline" "Streptococcus A,B,C,G" 0.125 0.125 FALSE
"EUCAST 2020" "DISK" "Streptococcus dysgalactiae equisimilis" "Tigecycline" "Streptococcus A,B,C,G" "15ug" 19 19 FALSE
"EUCAST 2020" "MIC" "Streptococcus dysgalactiae equisimilis" "Tigecycline" "Streptococcus A,B,C,G" 0.1253 0.1253 FALSE
"EUCAST 2020" "MIC" "Streptococcus dysgalactiae equisimilis" "Tigecycline" "Streptococcus A,B,C,G" 0.125 0.125 FALSE
"EUCAST 2020" "DISK" "Streptococcus equi" "Tigecycline" "Streptococcus A,B,C,G" "15ug" 19 19 FALSE
"EUCAST 2020" "MIC" "Streptococcus equi" "Tigecycline" "Streptococcus A,B,C,G" 0.1253 0.1253 FALSE
"EUCAST 2020" "MIC" "Streptococcus equi" "Tigecycline" "Streptococcus A,B,C,G" 0.125 0.125 FALSE
"EUCAST 2020" "DISK" "Streptococcus equi equi" "Tigecycline" "Streptococcus A,B,C,G" "15ug" 19 19 FALSE
"EUCAST 2020" "MIC" "Streptococcus equi equi" "Tigecycline" "Streptococcus A,B,C,G" 0.1253 0.1253 FALSE
"EUCAST 2020" "MIC" "Streptococcus equi equi" "Tigecycline" "Streptococcus A,B,C,G" 0.125 0.125 FALSE
"EUCAST 2020" "DISK" "Streptococcus equi ruminatorum" "Tigecycline" "Streptococcus A,B,C,G" "15ug" 19 19 FALSE
"EUCAST 2020" "MIC" "Streptococcus equi ruminatorum" "Tigecycline" "Streptococcus A,B,C,G" 0.1253 0.1253 FALSE
"EUCAST 2020" "MIC" "Streptococcus equi ruminatorum" "Tigecycline" "Streptococcus A,B,C,G" 0.125 0.125 FALSE
"EUCAST 2020" "DISK" "Streptococcus equi zooepidemicus" "Tigecycline" "Streptococcus A,B,C,G" "15ug" 19 19 FALSE
"EUCAST 2020" "MIC" "Streptococcus equi zooepidemicus" "Tigecycline" "Streptococcus A,B,C,G" 0.1253 0.1253 FALSE
"EUCAST 2020" "MIC" "Streptococcus equi zooepidemicus" "Tigecycline" "Streptococcus A,B,C,G" 0.125 0.125 FALSE
"EUCAST 2020" "DISK" "Streptococcus group A" "Tigecycline" "Streptococcus A,B,C,G" "15ug" 19 19 FALSE
"EUCAST 2020" "MIC" "Streptococcus group A" "Tigecycline" "Streptococcus A,B,C,G" 0.1253 0.1253 FALSE
"EUCAST 2020" "MIC" "Streptococcus group A" "Tigecycline" "Streptococcus A,B,C,G" 0.125 0.125 FALSE
"EUCAST 2020" "DISK" "Streptococcus group B" "Tigecycline" "Streptococcus A,B,C,G" "15ug" 19 19 FALSE
"EUCAST 2020" "MIC" "Streptococcus group B" "Tigecycline" "Streptococcus A,B,C,G" 0.1253 0.1253 FALSE
"EUCAST 2020" "MIC" "Streptococcus group B" "Tigecycline" "Streptococcus A,B,C,G" 0.125 0.125 FALSE
"EUCAST 2020" "DISK" "Streptococcus group C" "Tigecycline" "Streptococcus A,B,C,G" "15ug" 19 19 FALSE
"EUCAST 2020" "MIC" "Streptococcus group C" "Tigecycline" "Streptococcus A,B,C,G" 0.1253 0.1253 FALSE
"EUCAST 2020" "MIC" "Streptococcus group C" "Tigecycline" "Streptococcus A,B,C,G" 0.125 0.125 FALSE
"EUCAST 2020" "DISK" "Streptococcus group D" "Tigecycline" "Streptococcus A,B,C,G" "15ug" 19 19 FALSE
"EUCAST 2020" "MIC" "Streptococcus group D" "Tigecycline" "Streptococcus A,B,C,G" 0.1253 0.1253 FALSE
"EUCAST 2020" "MIC" "Streptococcus group D" "Tigecycline" "Streptococcus A,B,C,G" 0.125 0.125 FALSE
"EUCAST 2020" "DISK" "Streptococcus group F" "Tigecycline" "Streptococcus A,B,C,G" "15ug" 19 19 FALSE
"EUCAST 2020" "MIC" "Streptococcus group F" "Tigecycline" "Streptococcus A,B,C,G" 0.1253 0.1253 FALSE
"EUCAST 2020" "MIC" "Streptococcus group F" "Tigecycline" "Streptococcus A,B,C,G" 0.125 0.125 FALSE
"EUCAST 2020" "DISK" "Streptococcus group G" "Tigecycline" "Streptococcus A,B,C,G" "15ug" 19 19 FALSE
"EUCAST 2020" "MIC" "Streptococcus group G" "Tigecycline" "Streptococcus A,B,C,G" 0.1253 0.1253 FALSE
"EUCAST 2020" "MIC" "Streptococcus group G" "Tigecycline" "Streptococcus A,B,C,G" 0.125 0.125 FALSE
"EUCAST 2020" "DISK" "Streptococcus group H" "Tigecycline" "Streptococcus A,B,C,G" "15ug" 19 19 FALSE
"EUCAST 2020" "MIC" "Streptococcus group H" "Tigecycline" "Streptococcus A,B,C,G" 0.1253 0.1253 FALSE
"EUCAST 2020" "MIC" "Streptococcus group H" "Tigecycline" "Streptococcus A,B,C,G" 0.125 0.125 FALSE
"EUCAST 2020" "DISK" "Streptococcus group K" "Tigecycline" "Streptococcus A,B,C,G" "15ug" 19 19 FALSE
"EUCAST 2020" "MIC" "Streptococcus group K" "Tigecycline" "Streptococcus A,B,C,G" 0.1253 0.1253 FALSE
"EUCAST 2020" "MIC" "Streptococcus group K" "Tigecycline" "Streptococcus A,B,C,G" 0.125 0.125 FALSE
"EUCAST 2020" "DISK" "Streptococcus pyogenes" "Tigecycline" "Streptococcus A,B,C,G" "15ug" 19 19 FALSE
"EUCAST 2020" "MIC" "Streptococcus pyogenes" "Tigecycline" "Streptococcus A,B,C,G" 0.1253 0.1253 FALSE
"EUCAST 2020" "MIC" "Streptococcus pyogenes" "Tigecycline" "Streptococcus A,B,C,G" 0.125 0.125 FALSE
"EUCAST 2020" "DISK" "Streptococcus salivarius" "Tigecycline" "Streptococcus A,B,C,G" "15ug" 19 19 FALSE
"EUCAST 2020" "MIC" "Streptococcus salivarius" "Tigecycline" "Streptococcus A,B,C,G" 0.1253 0.1253 FALSE
"EUCAST 2020" "MIC" "Streptococcus salivarius" "Tigecycline" "Streptococcus A,B,C,G" 0.125 0.125 FALSE
"EUCAST 2020" "DISK" "Streptococcus sanguinis" "Tigecycline" "Streptococcus A,B,C,G" "15ug" 19 19 FALSE
"EUCAST 2020" "MIC" "Streptococcus sanguinis" "Tigecycline" "Streptococcus A,B,C,G" 0.1253 0.1253 FALSE
"EUCAST 2020" "MIC" "Streptococcus sanguinis" "Tigecycline" "Streptococcus A,B,C,G" 0.125 0.125 FALSE
"EUCAST 2020" "MIC" "(unknown name)" "Tigecycline" "PK PD breakpoints" 0.5 0.5 FALSE
"EUCAST 2020" "DISK" "Enterobacterales" "Ticarcillin" "Enterobacterales" "75ug" 23 20 FALSE
"EUCAST 2020" "MIC" "Enterobacterales" "Ticarcillin" "Enterobacterales" 8 1 FALSE
@ -1619,7 +1613,7 @@
"EUCAST 2020" "MIC" "Streptococcus salivarius" "Telithromycin" "Streptococcus A,B,C,G" 0.25 0.5 FALSE
"EUCAST 2020" "DISK" "Streptococcus sanguinis" "Telithromycin" "Streptococcus A,B,C,G" "15ug" 20 17 FALSE
"EUCAST 2020" "MIC" "Streptococcus sanguinis" "Telithromycin" "Streptococcus A,B,C,G" 0.25 0.5 FALSE
"EUCAST 2020" "MIC" "Staphylococcus" "Telavancin" "Staphylococcus" 0.125 0.1253 FALSE
"EUCAST 2020" "MIC" "Staphylococcus" "Telavancin" "Staphylococcus" 0.125 0.125 FALSE
"EUCAST 2020" "DISK" "UTI" "Enterobacterales" "Trimethoprim" "Enterobacterales" "5ug" 15 15 TRUE
"EUCAST 2020" "MIC" "UTI" "Enterobacterales" "Trimethoprim" "Enterobacterales" 4 4 TRUE
"EUCAST 2020" "DISK" "UTI" "Staphylococcus" "Trimethoprim" "Staphylococcus" "5ug" 14 14 TRUE
@ -1645,47 +1639,47 @@
"EUCAST 2020" "DISK" "Staphylococcus" "Tedizolid" "Staphylococcus" "2ug" 21 21 FALSE
"EUCAST 2020" "MIC" "Staphylococcus" "Tedizolid" "Staphylococcus" 0.5 0.5 FALSE
"EUCAST 2020" "DISK" "Streptococcus agalactiae" "Tedizolid" "Streptococcus A,B,C,G" "2ug" 18 18 FALSE
"EUCAST 2020" "MIC" "Streptococcus agalactiae" "Tedizolid" "Streptococcus A,B,C,G" 0.52 0.5 FALSE
"EUCAST 2020" "MIC" "Streptococcus agalactiae" "Tedizolid" "Streptococcus A,B,C,G" 0.5 0.5 FALSE
"EUCAST 2020" "DISK" "Streptococcus anginosus" "Tedizolid" "Streptococcus A,B,C,G" "2ug" 18 18 FALSE
"EUCAST 2020" "DISK" "Streptococcus anginosus" "Tedizolid" "Viridans group streptococci" "2ug" 18 18 FALSE
"EUCAST 2020" "MIC" "Streptococcus anginosus" "Tedizolid" "Streptococcus A,B,C,G" 0.52 0.5 FALSE
"EUCAST 2020" "MIC" "Streptococcus anginosus" "Tedizolid" "Streptococcus A,B,C,G" 0.5 0.5 FALSE
"EUCAST 2020" "MIC" "Streptococcus anginosus" "Tedizolid" "Viridans group streptococci" 0.25 0.25 FALSE
"EUCAST 2020" "DISK" "Streptococcus dysgalactiae" "Tedizolid" "Streptococcus A,B,C,G" "2ug" 18 18 FALSE
"EUCAST 2020" "MIC" "Streptococcus dysgalactiae" "Tedizolid" "Streptococcus A,B,C,G" 0.52 0.5 FALSE
"EUCAST 2020" "MIC" "Streptococcus dysgalactiae" "Tedizolid" "Streptococcus A,B,C,G" 0.5 0.5 FALSE
"EUCAST 2020" "DISK" "Streptococcus dysgalactiae dysgalactiae" "Tedizolid" "Streptococcus A,B,C,G" "2ug" 18 18 FALSE
"EUCAST 2020" "MIC" "Streptococcus dysgalactiae dysgalactiae" "Tedizolid" "Streptococcus A,B,C,G" 0.52 0.5 FALSE
"EUCAST 2020" "MIC" "Streptococcus dysgalactiae dysgalactiae" "Tedizolid" "Streptococcus A,B,C,G" 0.5 0.5 FALSE
"EUCAST 2020" "DISK" "Streptococcus dysgalactiae equisimilis" "Tedizolid" "Streptococcus A,B,C,G" "2ug" 18 18 FALSE
"EUCAST 2020" "MIC" "Streptococcus dysgalactiae equisimilis" "Tedizolid" "Streptococcus A,B,C,G" 0.52 0.5 FALSE
"EUCAST 2020" "MIC" "Streptococcus dysgalactiae equisimilis" "Tedizolid" "Streptococcus A,B,C,G" 0.5 0.5 FALSE
"EUCAST 2020" "DISK" "Streptococcus equi" "Tedizolid" "Streptococcus A,B,C,G" "2ug" 18 18 FALSE
"EUCAST 2020" "MIC" "Streptococcus equi" "Tedizolid" "Streptococcus A,B,C,G" 0.52 0.5 FALSE
"EUCAST 2020" "MIC" "Streptococcus equi" "Tedizolid" "Streptococcus A,B,C,G" 0.5 0.5 FALSE
"EUCAST 2020" "DISK" "Streptococcus equi equi" "Tedizolid" "Streptococcus A,B,C,G" "2ug" 18 18 FALSE
"EUCAST 2020" "MIC" "Streptococcus equi equi" "Tedizolid" "Streptococcus A,B,C,G" 0.52 0.5 FALSE
"EUCAST 2020" "MIC" "Streptococcus equi equi" "Tedizolid" "Streptococcus A,B,C,G" 0.5 0.5 FALSE
"EUCAST 2020" "DISK" "Streptococcus equi ruminatorum" "Tedizolid" "Streptococcus A,B,C,G" "2ug" 18 18 FALSE
"EUCAST 2020" "MIC" "Streptococcus equi ruminatorum" "Tedizolid" "Streptococcus A,B,C,G" 0.52 0.5 FALSE
"EUCAST 2020" "MIC" "Streptococcus equi ruminatorum" "Tedizolid" "Streptococcus A,B,C,G" 0.5 0.5 FALSE
"EUCAST 2020" "DISK" "Streptococcus equi zooepidemicus" "Tedizolid" "Streptococcus A,B,C,G" "2ug" 18 18 FALSE
"EUCAST 2020" "MIC" "Streptococcus equi zooepidemicus" "Tedizolid" "Streptococcus A,B,C,G" 0.52 0.5 FALSE
"EUCAST 2020" "MIC" "Streptococcus equi zooepidemicus" "Tedizolid" "Streptococcus A,B,C,G" 0.5 0.5 FALSE
"EUCAST 2020" "DISK" "Streptococcus group A" "Tedizolid" "Streptococcus A,B,C,G" "2ug" 18 18 FALSE
"EUCAST 2020" "MIC" "Streptococcus group A" "Tedizolid" "Streptococcus A,B,C,G" 0.52 0.5 FALSE
"EUCAST 2020" "MIC" "Streptococcus group A" "Tedizolid" "Streptococcus A,B,C,G" 0.5 0.5 FALSE
"EUCAST 2020" "DISK" "Streptococcus group B" "Tedizolid" "Streptococcus A,B,C,G" "2ug" 18 18 FALSE
"EUCAST 2020" "MIC" "Streptococcus group B" "Tedizolid" "Streptococcus A,B,C,G" 0.52 0.5 FALSE
"EUCAST 2020" "MIC" "Streptococcus group B" "Tedizolid" "Streptococcus A,B,C,G" 0.5 0.5 FALSE
"EUCAST 2020" "DISK" "Streptococcus group C" "Tedizolid" "Streptococcus A,B,C,G" "2ug" 18 18 FALSE
"EUCAST 2020" "MIC" "Streptococcus group C" "Tedizolid" "Streptococcus A,B,C,G" 0.52 0.5 FALSE
"EUCAST 2020" "MIC" "Streptococcus group C" "Tedizolid" "Streptococcus A,B,C,G" 0.5 0.5 FALSE
"EUCAST 2020" "DISK" "Streptococcus group D" "Tedizolid" "Streptococcus A,B,C,G" "2ug" 18 18 FALSE
"EUCAST 2020" "MIC" "Streptococcus group D" "Tedizolid" "Streptococcus A,B,C,G" 0.52 0.5 FALSE
"EUCAST 2020" "MIC" "Streptococcus group D" "Tedizolid" "Streptococcus A,B,C,G" 0.5 0.5 FALSE
"EUCAST 2020" "DISK" "Streptococcus group F" "Tedizolid" "Streptococcus A,B,C,G" "2ug" 18 18 FALSE
"EUCAST 2020" "MIC" "Streptococcus group F" "Tedizolid" "Streptococcus A,B,C,G" 0.52 0.5 FALSE
"EUCAST 2020" "MIC" "Streptococcus group F" "Tedizolid" "Streptococcus A,B,C,G" 0.5 0.5 FALSE
"EUCAST 2020" "DISK" "Streptococcus group G" "Tedizolid" "Streptococcus A,B,C,G" "2ug" 18 18 FALSE
"EUCAST 2020" "MIC" "Streptococcus group G" "Tedizolid" "Streptococcus A,B,C,G" 0.52 0.5 FALSE
"EUCAST 2020" "MIC" "Streptococcus group G" "Tedizolid" "Streptococcus A,B,C,G" 0.5 0.5 FALSE
"EUCAST 2020" "DISK" "Streptococcus group H" "Tedizolid" "Streptococcus A,B,C,G" "2ug" 18 18 FALSE
"EUCAST 2020" "MIC" "Streptococcus group H" "Tedizolid" "Streptococcus A,B,C,G" 0.52 0.5 FALSE
"EUCAST 2020" "MIC" "Streptococcus group H" "Tedizolid" "Streptococcus A,B,C,G" 0.5 0.5 FALSE
"EUCAST 2020" "DISK" "Streptococcus group K" "Tedizolid" "Streptococcus A,B,C,G" "2ug" 18 18 FALSE
"EUCAST 2020" "MIC" "Streptococcus group K" "Tedizolid" "Streptococcus A,B,C,G" 0.52 0.5 FALSE
"EUCAST 2020" "MIC" "Streptococcus group K" "Tedizolid" "Streptococcus A,B,C,G" 0.5 0.5 FALSE
"EUCAST 2020" "DISK" "Streptococcus pyogenes" "Tedizolid" "Streptococcus A,B,C,G" "2ug" 18 18 FALSE
"EUCAST 2020" "MIC" "Streptococcus pyogenes" "Tedizolid" "Streptococcus A,B,C,G" 0.52 0.5 FALSE
"EUCAST 2020" "MIC" "Streptococcus pyogenes" "Tedizolid" "Streptococcus A,B,C,G" 0.5 0.5 FALSE
"EUCAST 2020" "DISK" "Streptococcus salivarius" "Tedizolid" "Streptococcus A,B,C,G" "2ug" 18 18 FALSE
"EUCAST 2020" "MIC" "Streptococcus salivarius" "Tedizolid" "Streptococcus A,B,C,G" 0.52 0.5 FALSE
"EUCAST 2020" "MIC" "Streptococcus salivarius" "Tedizolid" "Streptococcus A,B,C,G" 0.5 0.5 FALSE
"EUCAST 2020" "DISK" "Streptococcus sanguinis" "Tedizolid" "Streptococcus A,B,C,G" "2ug" 18 18 FALSE
"EUCAST 2020" "MIC" "Streptococcus sanguinis" "Tedizolid" "Streptococcus A,B,C,G" 0.52 0.5 FALSE
"EUCAST 2020" "MIC" "Streptococcus sanguinis" "Tedizolid" "Streptococcus A,B,C,G" 0.5 0.5 FALSE
"EUCAST 2020" "DISK" "Enterobacterales" "Piperacillin/tazobactam" "Enterobacterales" "30-6ug" 20 17 FALSE
"EUCAST 2020" "MIC" "Enterobacterales" "Piperacillin/tazobactam" "Enterobacterales" 8 16 FALSE
"EUCAST 2020" "MIC" "Actinomyces" "Piperacillin/tazobactam" "Anaerobes, Grampositive" 8 16 FALSE
@ -1699,7 +1693,7 @@
"EUCAST 2020" "MIC" "Eggerthella" "Piperacillin/tazobactam" "Anaerobes, Grampositive" 8 16 FALSE
"EUCAST 2020" "MIC" "Fusobacterium" "Piperacillin/tazobactam" "Anaerobes, Gramnegative" 8 16 FALSE
"EUCAST 2020" "DISK" "Haemophilus influenzae" "Piperacillin/tazobactam" "H.influenzae" "30-6ug" 27 27 FALSE
"EUCAST 2020" "MIC" "Haemophilus influenzae" "Piperacillin/tazobactam" "H.influenzae" 0.256 0.256 FALSE
"EUCAST 2020" "MIC" "Haemophilus influenzae" "Piperacillin/tazobactam" "H.influenzae" 0.25 0.25 FALSE
"EUCAST 2020" "MIC" "Lactobacillus" "Piperacillin/tazobactam" "Anaerobes, Grampositive" 8 16 FALSE
"EUCAST 2020" "MIC" "Mobiluncus" "Piperacillin/tazobactam" "Anaerobes, Gramnegative" 8 16 FALSE
"EUCAST 2020" "MIC" "Parabacteroides" "Piperacillin/tazobactam" "Anaerobes, Gramnegative" 8 16 FALSE