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(v2.1.1.9060) SDD results now in as.sir()

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This commit is contained in:
dr. M.S. (Matthijs) Berends
2024-06-19 15:08:23 +02:00
parent 0c3d81f32e
commit c67d003e9e
17 changed files with 34127 additions and 34129 deletions
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8
inst/tinytest/test-sir.R
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@ -35,6 +35,8 @@ expect_identical(
unique(gsub("[^A-Z]", "", AMR::clinical_breakpoints$guideline)),
c("EUCAST", "CLSI")
)
# no missing SDDs
expect_identical(sum(is.na(AMR::clinical_breakpoints$is_SDD)), 0)
expect_true(as.sir("S") < as.sir("I"))
expect_true(as.sir("I") < as.sir("R"))
@ -292,6 +294,12 @@ expect_message(as.sir(data.frame(
specimen = c("urine", "blood")
)))
# SDD vs I in CLSI 2024
expect_identical(as.sir(as.mic(2 ^ c(-2:4)), mo = "Enterococcus faecium", ab = "Dapto", guideline = "CLSI 2024"),
as.sir(c("SDD", "SDD", "SDD", "SDD", "SDD", "R", "R")))
expect_identical(as.sir(as.mic(2 ^ c(-2:2)), mo = "Enterococcus faecium", ab = "Cipro
", guideline = "CLSI 2024"),
as.sir(c("S", "S", "S", "I", "R")))
# Veterinary --------------------------------------------------------------