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(v2.1.1.9060) SDD results now in as.sir()

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dr. M.S. (Matthijs) Berends
2024-06-19 15:08:23 +02:00
parent 0c3d81f32e
commit c67d003e9e
17 changed files with 34127 additions and 34129 deletions
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3
man/clinical_breakpoints.Rd
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@ -5,7 +5,7 @@
\alias{clinical_breakpoints}
\title{Data Set with Clinical Breakpoints for SIR Interpretation}
\format{
A \link[tibble:tibble]{tibble} with 34 085 observations and 13 variables:
A \link[tibble:tibble]{tibble} with 34 063 observations and 14 variables:
\itemize{
\item \code{guideline}\cr Name of the guideline
\item \code{type}\cr Breakpoint type, either "ECOFF", "animal", or "human"
@ -20,6 +20,7 @@ A \link[tibble:tibble]{tibble} with 34 085 observations and 13 variables:
\item \code{breakpoint_S}\cr Lowest MIC value or highest number of millimetres that leads to "S"
\item \code{breakpoint_R}\cr Highest MIC value or lowest number of millimetres that leads to "R"
\item \code{uti}\cr A \link{logical} value (\code{TRUE}/\code{FALSE}) to indicate whether the rule applies to a urinary tract infection (UTI)
\item \code{is_SDD}\cr A \link{logical} value (\code{TRUE}/\code{FALSE}) to indicate whether the intermediate range between "S" and "R" should be interpreted as "SDD", instead of "I". This currently applies to 24 breakpoints.
}
}
\usage{