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select() fix for freq

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This commit is contained in:
dr. M.S. (Matthijs) Berends
2019-01-17 12:08:04 +01:00
parent 1ee710c861
commit c6c3088e9f
30 changed files with 381 additions and 230 deletions
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8
R/freq.R
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@ -965,6 +965,14 @@ as.data.frame.frequency_tbl <- function(x, ...) {
as.data.frame.data.frame(x, ...)
}
#' @exportMethod select.frequency_tbl
#' @export
#' @importFrom dplyr select
#' @noRd
select.frequency_tbl <- function(.data, ...) {
select(as.data.frame(.data), ...)
}
#' @noRd
#' @exportMethod as_tibble.frequency_tbl
#' @export

35
R/globals.R
View File

@ -19,26 +19,15 @@
# Visit our website for more info: https://msberends.gitab.io/AMR. #
# ==================================================================== #
globalVariables(c(".",
"atc",
"certe",
"official",
"trade_name",
"umcg",
'se_min',
'se_max',
'labs',
'transmute',
'observed',
"..property",
"antibiotic",
"Antibiotic",
"antibiotics",
"atc",
"authors",
"Becker",
"certe",
"cnt",
"count",
"count.x",
@ -59,38 +48,46 @@ globalVariables(c(".",
"key_ab",
"key_ab_lag",
"key_ab_other",
"labs",
"Lancefield",
"lbl",
"median",
"mic",
"microorganisms",
"microorganisms.old",
"microorganismsDT",
"microorganisms.prevDT",
"microorganisms.unprevDT",
"microorganisms.oldDT",
"microorganisms.certe",
"microorganisms.old",
"microorganisms.oldDT",
"microorganisms.prevDT",
"microorganisms.umcg",
"microorganisms.unprevDT",
"microorganismsDT",
"mo",
"mo.old",
"more_than_episode_ago",
"n",
"name",
"observations",
"observed",
"official",
"other_pat_or_mo",
"Pasted",
"patient_id",
"prevalence",
"psae",
"R",
"ref",
"real_first_isolate",
"ref",
"S",
"se_max",
"se_min",
"septic_patients",
"shortname",
"species",
"trade_name",
"transmute",
"tsn",
"tsn_new",
"umcg",
"value",
"Value",
"y",