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Remove RSI from package, add extra MIC scale functions

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dr. M.S. (Matthijs) Berends
2023-12-03 11:34:48 +01:00
parent 6f417d0ef2
commit c7461766ce
21 changed files with 260 additions and 580 deletions
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4
R/key_antimicrobials.R
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@ -149,10 +149,6 @@ key_antimicrobials <- function(x = NULL,
meet_criteria(gram_positive, allow_class = "character", allow_NULL = TRUE)
meet_criteria(antifungal, allow_class = "character", allow_NULL = TRUE)
meet_criteria(only_sir_columns, allow_class = "logical", has_length = 1)
if ("only_rsi_columns" %in% names(list(...))) {
deprecation_warning("only_rsi_columns", "only_sir_columns", is_function = FALSE)
only_sir_columns <- list(...)$only_rsi_columns
}
# force regular data.frame, not a tibble or data.table
x <- as.data.frame(x, stringsAsFactors = FALSE)