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(v0.7.1.9069) documentation update

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dr. M.S. (Matthijs) Berends
2019-09-01 13:16:57 +02:00
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NEWS.md
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# AMR 0.7.1.9068
# AMR 0.7.1.9069
<small>Last updated: 01-Sep-2019</small>
### Breaking
* Determination of first isolates now **excludes** all 'unknown' microorganisms at default, i.e. microbial code `"UNKNOWN"`. They can be included with the new parameter `include_unknown`:
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### New
* Function `bug_drug_combinations()` to quickly get a `data.frame` with the antimicrobial resistance of any bug-drug combination in a data set:
```r
x <- bug_drug_combinations(septic_patients)
x <- bug_drug_combinations(example_isolates)
x
#> ab mo S I R total
#> 1 AMC B_ESCHR_COL 332 74 61 467
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```r
# (run this on your own console, as this page does not support colour printing)
library(dplyr)
septic_patients %>%
example_isolates %>%
select(mo:AMC) %>%
as_tibble()
```