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mirror of https://github.com/msberends/AMR.git synced 2025-09-14 13:09:38 +02:00
This commit is contained in:
2023-01-20 11:30:40 +01:00
parent 3152f1a1ce
commit c7da8b6479
18 changed files with 323 additions and 149 deletions

View File

@@ -59,6 +59,10 @@ S3method(as.list,custom_eucast_rules)
S3method(as.list,custom_mdro_guideline)
S3method(as.matrix,mic)
S3method(as.numeric,mic)
S3method(as.rsi,data.frame)
S3method(as.rsi,default)
S3method(as.rsi,disk)
S3method(as.rsi,mic)
S3method(as.sir,data.frame)
S3method(as.sir,default)
S3method(as.sir,disk)
@@ -173,6 +177,7 @@ export("%unlike%")
export("%unlike_case%")
export(NA_disk_)
export(NA_mic_)
export(NA_rsi_)
export(NA_sir_)
export(ab_atc)
export(ab_atc_group1)
@@ -256,17 +261,21 @@ export(custom_mdro_guideline)
export(eucast_dosage)
export(eucast_exceptional_phenotypes)
export(eucast_rules)
export(facet_rsi)
export(facet_sir)
export(filter_first_isolate)
export(first_isolate)
export(fluoroquinolones)
export(full_join_microorganisms)
export(g.test)
export(geom_rsi)
export(geom_sir)
export(get_AMR_locale)
export(get_episode)
export(get_mo_source)
export(ggplot_pca)
export(ggplot_rsi)
export(ggplot_rsi_predict)
export(ggplot_sir)
export(ggplot_sir_predict)
export(glycopeptides)
@@ -277,6 +286,7 @@ export(is.av)
export(is.disk)
export(is.mic)
export(is.mo)
export(is.rsi)
export(is.rsi.eligible)
export(is.sir)
export(is_new_episode)
@@ -285,6 +295,7 @@ export(italicise_taxonomy)
export(italicize_taxonomy)
export(key_antimicrobials)
export(kurtosis)
export(labels_rsi_count)
export(labels_sir_count)
export(left_join_microorganisms)
export(like)
@@ -335,6 +346,7 @@ export(mo_uncertainties)
export(mo_url)
export(mo_year)
export(mrgn)
export(n_rsi)
export(n_sir)
export(not_intrinsic_resistant)
export(oxazolidinones)
@@ -350,11 +362,15 @@ export(proportion_df)
export(quinolones)
export(random_disk)
export(random_mic)
export(random_rsi)
export(random_sir)
export(reset_AMR_locale)
export(resistance)
export(resistance_predict)
export(right_join_microorganisms)
export(rsi_df)
export(rsi_predict)
export(scale_rsi_colours)
export(scale_sir_colours)
export(scale_y_percent)
export(semi_join_microorganisms)
@@ -369,6 +385,7 @@ export(skewness)
export(streptogramins)
export(susceptibility)
export(tetracyclines)
export(theme_rsi)
export(theme_sir)
export(translate_AMR)
export(trimethoprims)