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2026-06-24 17:08:22 +00:00
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reference/random.md
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@@ -100,15 +100,15 @@ the `skew` and `severity` arguments:
``` r
random_mic(25)
#> Class <mic>
#> [1] 1 0.032 0.064 1 0.25 0.125 >=128 0.0002 32 0.25
#> [11] 0.008 0.125 0.001 0.032 8 >=128 0.032 0.008 8 >=128
#> [21] 0.125 0.0001 0.5 64 1
#> [1] 0.25 0.064 0.5 0.004 0.0001 0.032 0.008 16 0.016 0.125
#> [11] 0.0002 0.001 0.008 0.004 0.064 256 0.5 32 512 0.0002
#> [21] 0.004 1 0.002 0.0005 0.064
random_disk(25)
#> Class <disk>
#> [1] 49 39 29 30 16 23 44 50 25 28 29 14 44 34 8 33 33 34 38 42 10 42 43 11 46
#> [1] 49 44 31 11 27 33 39 24 19 43 30 44 33 31 22 13 37 19 26 29 44 12 46 18 27
random_sir(25)
#> Class <sir>
#> [1] I S S S R R S R I I I I S R S I S S S R R I R S I
#> [1] I R I S R S R R I R R I S S S I R R S I R S R I R
# add more skewedness, make more realistic by setting a bug and/or drug:
disks <- random_disk(100, severity = 2, mo = "Escherichia coli", ab = "CIP")
@@ -121,29 +121,27 @@ plot(disks, mo = "Escherichia coli", ab = "CIP", guideline = "CLSI 2025")
# \donttest{
random_mic(25, "Klebsiella pneumoniae") # range 0.0625-64
#> Class <mic>
#> [1] 256 <=0.0001 <=0.0001 0.016 1 0.016 2 8
#> [9] 0.5 0.004 0.032 0.004 0.001 0.001 0.064 0.002
#> [17] 0.032 0.004 0.008 16 0.125 <=0.0001 0.001 0.008
#> [25] 0.001
#> [1] 0.004 0.0002 0.008 0.25 0.0005 0.0002 8 0.032 0.0005 0.016
#> [11] 0.032 32 1 0.0005 0.016 0.002 0.016 0.0005 0.004 0.25
#> [21] 0.0005 0.016 0.001 0.25 0.032
random_mic(25, "Klebsiella pneumoniae", "meropenem") # range 0.0625-16
#> Class <mic>
#> [1] 0.5 <=0.25 0.5 4 1 1 0.5 0.5 0.5 <=0.25
#> [11] 0.5 0.5 2 1 <=0.25 <=0.25 8 <=0.25 1 1
#> [21] <=0.25 0.5 16 2 0.5
#> [1] 0.5 >=1 0.5 0.5 0.5 0.5 >=1 0.5 0.5 0.5 0.5 0.5 0.5 0.5 >=1 0.5 >=1 0.5 0.5
#> [20] 0.5 0.5 >=1 >=1 >=1 >=1
random_mic(25, "Streptococcus pneumoniae", "meropenem") # range 0.0625-4
#> Class <mic>
#> [1] 0.125 0.125 0.125 0.125 0.125 >=0.25 0.125 0.125 0.125 0.125
#> [11] >=0.25 0.125 >=0.25 0.125 0.125 0.125 >=0.25 0.125 >=0.25 >=0.25
#> [21] >=0.25 0.125 0.125 0.125 >=0.25
#> [1] 0.25 <=0.125 <=0.125 0.25 0.25 <=0.125 0.25 0.25 0.25
#> [10] 0.25 <=0.125 <=0.125 0.25 0.25 <=0.125 <=0.125 <=0.125 0.25
#> [19] <=0.125 <=0.125 <=0.125 <=0.125 0.25 0.25 0.25
random_disk(25, "Klebsiella pneumoniae") # range 8-50
#> Class <disk>
#> [1] 18 32 21 19 23 10 30 18 22 34 19 32 28 18 25 7 27 23 28 17 29 18 22 28 23
#> [1] 10 32 34 18 17 31 31 21 18 19 27 18 20 11 34 30 28 20 29 9 21 33 34 25 17
random_disk(25, "Klebsiella pneumoniae", "ampicillin") # range 11-17
#> Class <disk>
#> [1] 22 18 13 22 17 12 20 20 16 20 22 22 18 20 20 22 22 16 13 17 15 17 16 22 15
#> [1] 17 17 20 22 13 21 21 14 11 18 18 18 21 18 14 22 19 20 18 16 17 12 22 21 19
random_disk(25, "Streptococcus pneumoniae", "ampicillin") # range 12-27
#> Class <disk>
#> [1] 31 30 30 28 24 35 28 34 28 29 27 29 24 21 13 16 34 19 26 20 27 32 32 24 26
#> [1] 24 31 26 26 33 16 29 17 28 27 27 35 33 33 29 32 18 33 33 29 28 32 25 17 31
# }
```