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2026-03-22 19:55:49 +00:00
parent 3560dfd611
commit c95646d39c
120 changed files with 617 additions and 675 deletions
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10
reference/mdro.md
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@@ -297,9 +297,8 @@ susceptible isolates.
``` r
out <- mdro(example_isolates)
#> Warning: in `mdro()` (`?AMR::mdro()`): NA introduced for isolates where the available
#> percentage of antimicrobial classes was below 50% (set with
#> `pct_required_classes`)
#> Warning: in `?mdro()`: NA introduced for isolates where the available percentage of
#> antimicrobial classes was below 50% (set with `pct_required_classes`)
str(out)
#> Ord.factor w/ 4 levels "Negative"<"Multi-drug-resistant (MDR)"<..: NA NA 1 1 1 1 NA NA 1 1 ...
table(out)
@@ -325,9 +324,8 @@ if (require("dplyr")) {
#> Warning: There was 1 warning in `mutate()`.
#> ℹ In argument: `MDRO = mdro()`.
#> Caused by warning:
#> ! in `mdro()` (`?AMR::mdro()`): NA introduced for isolates where the available
#> percentage of antimicrobial classes was below 50% (set with
#> `pct_required_classes`)
#> ! in `?mdro()`: NA introduced for isolates where the available percentage of
#> antimicrobial classes was below 50% (set with `pct_required_classes`)
#> # A tibble: 3 × 2
#> MDRO n
#> <ord> <int>