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2026-03-22 19:55:49 +00:00
parent 3560dfd611
commit c95646d39c
120 changed files with 617 additions and 675 deletions
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reference/mo_matching_score.md
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@@ -186,12 +186,11 @@ mo_reset_session()
#> ℹ Reset 17 previously matched input values.
as.mo("E. coli")
#> Class 'mo'
#> Class <mo>
#> [1] B_ESCHR_COLI
mo_uncertainties()
#> Matching scores are based on the resemblance between the input and the full
#> taxonomic name, and the pathogenicity in humans. See `mo_matching_score()`
#> (`?AMR::mo_matching_score()`).
#> taxonomic name, and the pathogenicity in humans. See `?mo_matching_score()`.
#> Colour keys: 0.000-0.549 0.550-0.649 0.650-0.749 0.750-1.000
#> -------------------------------------------------------------------------------
#> "E. coli" -> Escherichia coli (B_ESCHR_COLI, 0.688)
@@ -201,10 +200,9 @@ mo_uncertainties()
#> (0.577), Enterobacter cloacae cloacae (0.571), Enterobacter cloacae complex
#> (0.571), and Enterobacter cloacae dissolvens (0.565)
#>
#> ℹ Only the first 10 other matches of each record are shown. Run
#> `print(mo_uncertainties(), n = ...)` (`?AMR::mo_uncertainties()`) to view
#> more entries, or save `mo_uncertainties()` (`?AMR::mo_uncertainties()`) to an
#> object.
#> ℹ Only the first 10 other matches of each record are shown. Run ``
#> ?`print(mo_uncertainties(), n = ...)` `` to view more entries, or save
#> `?mo_uncertainties()` to an object.
mo_matching_score(
x = "E. coli",