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2026-03-22 19:55:49 +00:00
parent 3560dfd611
commit c95646d39c
120 changed files with 617 additions and 675 deletions
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17
reference/mo_property.md
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@@ -485,10 +485,9 @@ mo_mycobank("Candida albicans")
mo_mycobank("Candida krusei")
#> [1] "337013"
mo_mycobank("Candida krusei", keep_synonyms = TRUE)
#> Warning: `as.mo()` (`?AMR::as.mo()`) returned one outdated taxonomic name. Use
#> `keep_synonyms = FALSE` to clean the input to currently accepted taxonomic
#> names, or set the R option `AMR_keep_synonyms` to `FALSE`. This warning will be
#> shown once per session.
#> Warning: `?as.mo()` returned one outdated taxonomic name. Use `keep_synonyms = FALSE` to
#> clean the input to currently accepted taxonomic names, or set the R option
#> `AMR_keep_synonyms` to `FALSE`. This warning will be shown once per session.
#> [1] "268707"
@@ -580,9 +579,8 @@ if (require("dplyr")) {
filter(mo_is_gram_positive()) %>%
count(mo_genus(), sort = TRUE)
}
#> ℹ Using column 'mo' as input for `mo_is_gram_positive()`
#> (`?AMR::mo_is_gram_positive()`)
#> ℹ Using column 'mo' as input for `mo_genus()` (`?AMR::mo_genus()`)
#> ℹ Using column 'mo' as input for `?mo_is_gram_positive()`
#> ℹ Using column 'mo' as input for `?mo_genus()`
#> # A tibble: 18 × 2
#> `mo_genus()` n
#> <chr> <int>
@@ -609,9 +607,8 @@ if (require("dplyr")) {
filter(mo_is_intrinsic_resistant(ab = "vanco")) %>%
count(mo_genus(), sort = TRUE)
}
#> ℹ Using column 'mo' as input for `mo_is_intrinsic_resistant()`
#> (`?AMR::mo_is_intrinsic_resistant()`)
#> ℹ Using column 'mo' as input for `mo_genus()` (`?AMR::mo_genus()`)
#> ℹ Using column 'mo' as input for `?mo_is_intrinsic_resistant()`
#> ℹ Using column 'mo' as input for `?mo_genus()`
#> # A tibble: 19 × 2
#> `mo_genus()` n
#> <chr> <int>