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2026-03-22 19:55:49 +00:00
parent 3560dfd611
commit c95646d39c
120 changed files with 617 additions and 675 deletions

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@@ -109,7 +109,7 @@ column will be kept when creating the RDS file.
And now we can use it in our functions:
as.mo("lab_mo_ecoli")
#> Class 'mo'
#> Class <mo>
#> [1] B_ESCHR_COLI
mo_genus("lab_mo_kpneumoniae")
@@ -119,7 +119,7 @@ And now we can use it in our functions:
as.mo(c("Escherichia coli", "E. coli", "lab_mo_ecoli"))
#> NOTE: Translation to one microorganism was guessed with uncertainty.
#> Use mo_uncertainties() to review it.
#> Class 'mo'
#> Class <mo>
#> [1] B_ESCHR_COLI B_ESCHR_COLI B_ESCHR_COLI
If we edit the Excel file by, let's say, adding row 4 like this:
@@ -139,7 +139,7 @@ file:
#> NOTE: Updated mo_source file '/Users/me/mo_source.rds' (0.3 kB) from
#> '/Users/me/Documents/ourcodes.xlsx' (9 kB), columns
#> "Organisation XYZ" and "mo"
#> Class 'mo'
#> Class <mo>
#> [1] B_ESCHR_COLI
mo_genus("lab_Staph_aureus")