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2026-03-22 19:55:49 +00:00
parent 3560dfd611
commit c95646d39c
120 changed files with 617 additions and 675 deletions

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@@ -87,16 +87,16 @@ the `skew` and `severity` arguments:
``` r
random_mic(25)
#> Class 'mic'
#> Class <mic>
#> [1] 0.008 0.125 4 32 1 0.004 0.008 0.0002
#> [9] 0.125 2 0.008 0.008 0.016 0.125 0.064 <=0.0001
#> [17] 0.0005 0.0002 0.5 0.002 0.002 0.25 16 <=0.0001
#> [25] 0.002
random_disk(25)
#> Class 'disk'
#> Class <disk>
#> [1] 25 47 24 47 38 28 36 33 31 50 41 29 40 31 44 45 37 40 44 49 9 48 20 37 47
random_sir(25)
#> Class 'sir'
#> Class <sir>
#> [1] S S R R S S I S I S S I S R I I I I S I R I I I I
# add more skewedness, make more realistic by setting a bug and/or drug:
@@ -109,29 +109,29 @@ plot(disks, mo = "Escherichia coli", ab = "CIP", guideline = "CLSI 2025")
# \donttest{
random_mic(25, "Klebsiella pneumoniae") # range 0.0625-64
#> Class 'mic'
#> Class <mic>
#> [1] 2 0.001 4 0.008 0.0005 0.0005 0.0005 0.0002 0.0002 >=64
#> [11] 0.0002 1 0.5 0.002 0.5 0.002 0.001 0.032 0.008 0.004
#> [21] 0.032 0.0002 0.0005 0.002 0.001
random_mic(25, "Klebsiella pneumoniae", "meropenem") # range 0.0625-16
#> Class 'mic'
#> Class <mic>
#> [1] <=0.5 <=0.5 2 <=0.5 1 <=0.5 <=0.5 <=0.5 <=0.5 1 <=0.5 <=0.5
#> [13] <=0.5 1 <=0.5 1 <=0.5 <=0.5 <=0.5 <=0.5 <=0.5 <=0.5 2 1
#> [25] 2
random_mic(25, "Streptococcus pneumoniae", "meropenem") # range 0.0625-4
#> Class 'mic'
#> Class <mic>
#> [1] 0.125 0.125 1 0.25 0.5 0.125 0.125 0.125 0.125 0.125 0.125 0.125
#> [13] 1 0.125 0.5 1 0.125 0.25 0.5 0.25 0.5 0.5 0.5 0.125
#> [25] 0.25
random_disk(25, "Klebsiella pneumoniae") # range 8-50
#> Class 'disk'
#> Class <disk>
#> [1] 32 21 23 21 14 22 25 29 29 28 34 34 34 33 13 28 33 34 32 25 18 26 13 21 33
random_disk(25, "Klebsiella pneumoniae", "ampicillin") # range 11-17
#> Class 'disk'
#> Class <disk>
#> [1] 20 21 15 22 16 22 16 14 21 17 15 19 20 17 18 21 16 20 11 22 19 18 19 11 21
random_disk(25, "Streptococcus pneumoniae", "ampicillin") # range 12-27
#> Class 'disk'
#> Class <disk>
#> [1] 29 25 31 17 29 21 31 34 33 31 29 30 23 20 33 20 34 32 35 26 26 26 34 30 33
# }
```