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scientific notation for MICs

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dr. M.S. (Matthijs) Berends committed 2023-10-20 15:45:00 +02:00
1 parent bcab4bc9ba
commit ca72a646d0
8 files changed
+23 -7
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inst/tinytest/test-first_isolate.R
+13
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@@ -45,6 +45,19 @@ expect_equal(
1373
)
# for phenotype determination
expect_equal(AMR:::duplicated_antibiogram("SSSS", points_threshold = 2, ignore_I = TRUE, type = "points"),
FALSE)
expect_equal(AMR:::duplicated_antibiogram(c("RRR", "SSS"),
points_threshold = 2, ignore_I = TRUE, type = "points"),
c(FALSE, FALSE))
expect_equal(AMR:::duplicated_antibiogram(c("RRR", "RRR", "SSS"),
points_threshold = 2, ignore_I = TRUE, type = "points"),
c(FALSE, TRUE, FALSE))
expect_equal(AMR:::duplicated_antibiogram(c("RRR", "RSS", "SSS", "RSS", "RRR", "RRR", "SSS", "RSS", "RSR", "RRR"),
points_threshold = 2, ignore_I = TRUE, type = "points"),
c(FALSE, FALSE, FALSE, TRUE, TRUE, TRUE, TRUE, TRUE, FALSE, TRUE))
# Phenotype-based, using key antimicrobials
expect_equal(
sum(first_isolate(