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@ -10,7 +10,7 @@
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9152</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -193,42 +193,42 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 0.005 4 16 0.01 1 16 0.25 0.005 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.125 <=0.002 0.125 64 0.25 4 1 128 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 64 >=256 0.25 8 >=256 2 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 256 2 0.125 64 0.5 0.025 <=0.001 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.025 16 0.0625 0.005 32 <=0.001 0.25 2 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 16 128 64 256 32 256 0.005 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 32 30 15 34 20 43 17 28 30 50 25 10 47 23 26 13 32 24 28 46 36 14 50 46 21</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 12 10 46 48 20 46 12 18 31 21 8 7 24 21 48 48 26 42 40 18 47 7 16 9 9</span>
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<span class="r-in"><span><span class="fu">random_sir</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] S R S R I R S S S I S I R I I I S I R I S S R S I</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] S R I S R S I R I S R S I I S I R S S I S I R R I</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 >=64 0.025 16 0.125 2 32 32 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.5 2 0.0625 16 0.25 0.01 4 0.002 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 1 <=0.001 0.0625 0.0625 8 >=64 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 32 4 0.25 4 0.5 2 0.5 0.01 0.01 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.001 1 2 2 0.005 0.5 >=256 0.5 16 0.0625</span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.002 0.01 0.0625 8 0.125 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.5 1 4 2 1 1 >=16 0.5 4 0.5 0.5 1 2 >=16 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 4 0.5 8 2 >=16 0.5 4 8 2 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 >=16 4 1 8 4 4 >=16 1 4 8 8 >=16 2 >=16</span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 1 1 1 2 >=16 >=16 8 1 >=16 1 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] >=4 0.25 0.5 0.5 0.125 1 0.25 >=4 0.5 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.5 1 0.0625 0.5 0.5 0.0625 2 0.125 1 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.25 0.0625 1 0.25 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 2 0.0625 0.025 1 0.025 0.125 0.025 0.125 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.5 4 0.025 4 8 2 4 0.5 0.0625 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.025 0.5 >=16 0.125 0.025 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 33 30 28 41 44 12 12 40 23 45 9 40 49 34 33 20 10 16 42 39 8 40 24 44</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 47 49 49 45 43 38 34 45 32 20 15 23 21 20 46 21 40 46 46 17 24 33 23 40 49</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 13 13 17 11 14 12 13 13 13 11 15 13 15 15 11 13 14 12 13 12 17 16 15 14 11</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 11 15 15 17 17 15 12 14 16 15 16 12 13 12 13 17 17 13 12 14 13 17 16 17 16</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 17 20 22 21 24 15 15 22 26 15 27 21 15 15 22 19 20 20 27 24 18 15 26 25 15</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 27 19 16 24 26 16 22 25 24 24 21 27 17 20 23 18 27 26 15 24 26 22 26 18 24</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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