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(v3.0.1.9032) fix unit tests
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@@ -1,5 +1,5 @@
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Package: AMR
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Version: 3.0.1.9031
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Version: 3.0.1.9032
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Date: 2026-03-08
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Title: Antimicrobial Resistance Data Analysis
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Description: Functions to simplify and standardise antimicrobial resistance (AMR)
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2
NEWS.md
2
NEWS.md
@@ -1,4 +1,4 @@
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# AMR 3.0.1.9031
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# AMR 3.0.1.9032
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### New
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* Integration with the **tidymodels** framework to allow seamless use of SIR, MIC and disk data in modelling pipelines via `recipes`
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2
R/mdro.R
2
R/mdro.R
@@ -506,7 +506,7 @@ mdro <- function(x = NULL,
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.new_col <- paste0(.base_code, ".inferred_sir_proxy_from#", paste0(.combos, collapse = "/"), "#")
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x[[.new_col]] <- ifelse(rowSums(.sir_chars == "R", na.rm = TRUE) > 0L, "R", NA_character_)
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cols_ab <- c(cols_ab, stats::setNames(.new_col, .base_code))
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if (info == TRUE) {
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if (isTRUE(info.bak)) {
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message_(
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"Inferring resistance for ",
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ab_name(.base_code, language = NULL, tolower = TRUE),
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@@ -178,9 +178,15 @@ test_that("test-zzz.R", {
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also_load = FALSE,
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min_version = if (pkg == "dplyr") "1.0.0" else NULL
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)) {
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if (pkg == "rstudioapi") {
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expect_true(is.function(tryCatch(get(fn, envir = asNamespace(pkg)), error = function(e) NULL)),
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info = paste0("Function does not exist (anymore): function `", pkg, "::", fn, "()`")
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)
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} else {
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expect_true(!is.null(AMR:::import_fn(name = fn, pkg = pkg, error_on_fail = FALSE)),
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info = paste0("Function does not exist (anymore): function `", pkg, "::", fn, "()`")
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)
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}
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} else if (pkg != "rstudioapi") {
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warning("Package '", pkg, "' not available")
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}
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