From cbad93d92b63f7148f5f5dcaf74abd4d708be608 Mon Sep 17 00:00:00 2001 From: "Matthijs S. Berends" Date: Sun, 10 Feb 2019 08:49:57 +0100 Subject: [PATCH] wget dependency --- .gitlab-ci.yml | 2 +- NAMESPACE | 189 ------------------------------------------------- 2 files changed, 1 insertion(+), 190 deletions(-) diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index be8dc0fe..7e7283be 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -33,7 +33,7 @@ variables: before_script: - apt-get update -qq # install dependencies for packages - - apt-get install -y locales libxml2-dev libssl-dev libcurl4-openssl-dev zlib1g-dev r-base > /dev/null + - apt-get install -y wget locales libxml2-dev libssl-dev libcurl4-openssl-dev zlib1g-dev r-base > /dev/null # recent pandoc - wget https://github.com/jgm/pandoc/releases/download/2.6/pandoc-2.6-1-amd64.deb - dpkg -i pandoc*.deb diff --git a/NAMESPACE b/NAMESPACE index 79cac6fa..a45e7b30 100755 --- a/NAMESPACE +++ b/NAMESPACE @@ -1,194 +1,5 @@ # Generated by roxygen2: do not edit by hand -S3method(as.data.frame,atc) -S3method(as.data.frame,frequency_tbl) -S3method(as.data.frame,mo) -S3method(as.double,mic) -S3method(as.integer,mic) -S3method(as.numeric,mic) -S3method(as.vector,frequency_tbl) -S3method(as_tibble,frequency_tbl) -S3method(barplot,mic) -S3method(barplot,rsi) -S3method(diff,frequency_tbl) -S3method(droplevels,mic) -S3method(droplevels,rsi) -S3method(format,frequency_tbl) -S3method(hist,frequency_tbl) -S3method(kurtosis,data.frame) -S3method(kurtosis,default) -S3method(kurtosis,matrix) -S3method(plot,frequency_tbl) -S3method(plot,mic) -S3method(plot,resistance_predict) -S3method(plot,rsi) -S3method(print,atc) -S3method(print,frequency_tbl) -S3method(print,mic) -S3method(print,mo) -S3method(print,rsi) -S3method(pull,atc) -S3method(pull,mo) -S3method(select,frequency_tbl) -S3method(skewness,data.frame) -S3method(skewness,default) -S3method(skewness,matrix) -S3method(summary,mic) -S3method(summary,mo) -S3method(summary,rsi) -export("%like%") -export(EUCAST_rules) -export(ab_atc) -export(ab_certe) -export(ab_name) -export(ab_official) -export(ab_property) -export(ab_tradenames) -export(ab_trivial_nl) -export(ab_umcg) -export(abname) -export(age) -export(age_groups) -export(anti_join_microorganisms) -export(as.atc) -export(as.mic) -export(as.mo) -export(as.rsi) -export(atc_certe) -export(atc_ddd) -export(atc_groups) -export(atc_name) -export(atc_official) -export(atc_online_ddd) -export(atc_online_groups) -export(atc_online_property) -export(atc_property) -export(atc_tradenames) -export(atc_trivial_nl) -export(atc_umcg) -export(availability) -export(brmo) -export(count_I) -export(count_IR) -export(count_R) -export(count_S) -export(count_SI) -export(count_all) -export(count_df) -export(eucast_exceptional_phenotypes) -export(eucast_rules) -export(facet_rsi) -export(filter_first_isolate) -export(filter_first_weighted_isolate) -export(first_isolate) -export(freq) -export(frequency_tbl) -export(full_join_microorganisms) -export(g.test) -export(geom_rsi) -export(get_locale) -export(get_mo_source) -export(ggplot_rsi) -export(ggplot_rsi_predict) -export(guess_ab_col) -export(guess_atc) -export(guess_mo) -export(header) -export(inner_join_microorganisms) -export(interpretive_reading) -export(is.atc) -export(is.mic) -export(is.mo) -export(is.rsi) -export(is.rsi.eligible) -export(key_antibiotics) -export(key_antibiotics_equal) -export(kurtosis) -export(labels_rsi_count) -export(left_join_microorganisms) -export(like) -export(mdro) -export(mo_TSN) -export(mo_authors) -export(mo_class) -export(mo_failures) -export(mo_family) -export(mo_fullname) -export(mo_genus) -export(mo_gramstain) -export(mo_kingdom) -export(mo_order) -export(mo_phylum) -export(mo_property) -export(mo_ref) -export(mo_renamed) -export(mo_shortname) -export(mo_species) -export(mo_subkingdom) -export(mo_subspecies) -export(mo_taxonomy) -export(mo_type) -export(mo_uncertainties) -export(mo_year) -export(mrgn) -export(n_rsi) -export(p.symbol) -export(portion_I) -export(portion_IR) -export(portion_R) -export(portion_S) -export(portion_SI) -export(portion_df) -export(ratio) -export(read.4D) -export(resistance_predict) -export(right_join_microorganisms) -export(rsi) -export(rsi_predict) -export(scale_rsi_colours) -export(scale_y_percent) -export(semi_join_microorganisms) -export(set_mo_source) -export(skewness) -export(theme_rsi) -export(top_freq) -exportMethods(as.data.frame.atc) -exportMethods(as.data.frame.frequency_tbl) -exportMethods(as.data.frame.mo) -exportMethods(as.double.mic) -exportMethods(as.integer.mic) -exportMethods(as.numeric.mic) -exportMethods(as.vector.frequency_tbl) -exportMethods(as_tibble.frequency_tbl) -exportMethods(barplot.mic) -exportMethods(barplot.rsi) -exportMethods(diff.frequency_tbl) -exportMethods(droplevels.mic) -exportMethods(droplevels.rsi) -exportMethods(format.frequency_tbl) -exportMethods(hist.frequency_tbl) -exportMethods(kurtosis) -exportMethods(kurtosis.data.frame) -exportMethods(kurtosis.default) -exportMethods(kurtosis.matrix) -exportMethods(plot.frequency_tbl) -exportMethods(plot.mic) -exportMethods(plot.rsi) -exportMethods(print.atc) -exportMethods(print.frequency_tbl) -exportMethods(print.mic) -exportMethods(print.mo) -exportMethods(print.rsi) -exportMethods(pull.atc) -exportMethods(pull.mo) -exportMethods(select.frequency_tbl) -exportMethods(skewness) -exportMethods(skewness.data.frame) -exportMethods(skewness.default) -exportMethods(skewness.matrix) -exportMethods(summary.mic) -exportMethods(summary.mo) -exportMethods(summary.rsi) importFrom(crayon,bgGreen) importFrom(crayon,bgRed) importFrom(crayon,bgYellow)