diff --git a/DESCRIPTION b/DESCRIPTION index 3342c591..aaa2949f 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,5 +1,5 @@ Package: AMR -Version: 2.1.1.9045 +Version: 2.1.1.9046 Date: 2024-06-12 Title: Antimicrobial Resistance Data Analysis Description: Functions to simplify and standardise antimicrobial resistance (AMR) diff --git a/NEWS.md b/NEWS.md index 68e94067..5ad38a72 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,4 +1,4 @@ -# AMR 2.1.1.9045 +# AMR 2.1.1.9046 *(this beta version will eventually become v3.0. We're happy to reach a new major milestone soon, which will be all about the new One Health support!)* diff --git a/index.md b/index.md index e6940497..c8d46935 100644 --- a/index.md +++ b/index.md @@ -1,12 +1,14 @@ # The `AMR` Package for R * Provides an **all-in-one solution** for AMR data analysis in a One Health approach +* Used in over 175 countries, translated into 20 languages * Generates **antibiograms** - traditional, combined, syndromic, and even WISCA * Provides the **full microbiological taxonomy** and extensive info on **all antimicrobial drugs** -* Applies all recent **CLSI and EUCAST clinical and veterinary breakpoints** for MICs and disk zones -* Corrects for duplicate isolates, **calculates and predicts AMR** per antibiotic class +* Applies all recent **CLSI** and **EUCAST** clinical and veterinary breakpoints for MICs and disk zones +* Corrects for duplicate isolates using 4 methods, **calculates** and **predicts** AMR per antibiotic class * Integrates with **WHONET**, ATC, **EARS-Net**, PubChem, **LOINC**, **SNOMED CT**, and **NCBI** -* Works on Windows, macOS and Linux with **all versions of R** since R-3.0 and is completely **dependency-free**, highly suitable for places with **limited resources** +* 100% free of costs and dependencies, highly suitable for places with **limited resources** +* **Easy to use** and **easy to learn**, with a **community** of contributors from around the globe

https://msberends.github.io/AMR

diff --git a/inst/tinytest/test-count.R b/inst/tinytest/test-count.R index ea82baa5..806417ba 100644 --- a/inst/tinytest/test-count.R +++ b/inst/tinytest/test-count.R @@ -95,10 +95,8 @@ if (AMR:::pkg_is_available("dplyr", min_version = "1.0.0", also_load = TRUE)) { example_isolates %>% select(AMX) %>% count_df(combine_SI = FALSE) %>% pull(value), c( suppressWarnings(example_isolates$AMX %>% count_S()), - 0, example_isolates$AMX %>% count_I(), - example_isolates$AMX %>% count_R(), - 0 + example_isolates$AMX %>% count_R() ) )