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mirror of https://github.com/msberends/AMR.git synced 2025-07-10 15:41:49 +02:00

New mo algorithm, prepare for 2.0

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Dr. Matthijs Berends
2022-10-05 09:12:22 +02:00
committed by GitHub
parent 63fe160322
commit cd2acc4a29
182 changed files with 4054 additions and 90905 deletions

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citHeader("To cite our AMR package in publications, please use below preprint. This preprint was accepted for publication in the Journal of Statistical Software, but we are awaiting the actual publication. Many thanks for using our open-source method to work with microbial and antimicrobial data!")
citEntry(
entry = "Article",
title = "AMR - An R Package for Working with Antimicrobial Resistance Data",
author = "M S Berends and C F Luz and A W Friedrich and B N M Sinha and C J Albers and C Glasner",
doi = "10.1101/810622",
bibentry(bibtype = "Article",
title = "{AMR}: An {R} Package for Working with Antimicrobial Resistance Data",
author = c(person(given = c("Matthijs", "S."),
family = "Berends",
email = "m.berends@certe.nl"),
person(given = c("Christian", "F."),
family = "Luz"),
person(given = c("Alexander", "W."),
family = "Friedrich"),
person(given = c("Bhanu", "N.", "M."),
family = "Sinha"),
person(given = c("Casper", "J."),
family = "Albers"),
person(given = "Corinna",
family = "Glasner")),
journal = "Journal of Statistical Software",
pages = "Accepted for publication",
year = 2021,
url = "https://www.biorxiv.org/content/10.1101/810622",
textVersion = "Berends MS, Luz CF, Friedrich AW, Sinha BNM, Albers CJ, Glasner C (2021). AMR - An R Package for Working with
Antimicrobial Resistance Data. Journal of Statistical Software (accepted for publication), https://www.biorxiv.org/content/10.1101/810622, doi: 10.1101/810622."
)
citEntry(
entry = "PhdThesis",
title = "A New Instrument for Microbial Epidemiology: Empowering Antimicrobial Resistance Data Analysis",
author = "M S Berends",
publisher = "University of Groningen",
school = "University of Groningen",
doi = "10.33612/diss.177417131",
pages = 287,
year = 2021,
textVersion = "Berends, MS (2021). A New Instrument for Microbial Epidemiology: Empowering Antimicrobial Resistance Data Analysis (PhD thesis). University of Groningen, doi: 10.33612/diss.177417131."
)
citEntry(
entry = "PhdThesis",
title = "Data Science for Infection Management & Antimicrobial Stewardship",
author = "C F Luz",
publisher = "University of Groningen",
school = "University of Groningen",
doi = "10.33612/diss.192486375",
pages = 326,
year = 2021,
textVersion = "Luz, CF (2021). Data Science for Infection Management & Antimicrobial Stewardship (PhD thesis). University of Groningen, doi: 10.33612/diss.192486375."
year = "2022",
volume = "104",
number = "3",
pages = "1--31",
doi = "10.18637/jss.v104.i03",
header = "To cite AMR in publications use:"
)