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global var fix

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dr. M.S. (Matthijs) Berends
2019-02-27 19:02:47 +01:00
parent 95c49fdf79
commit cf3bdb54c7
10 changed files with 270 additions and 267 deletions
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2
tests/testthat/test-mo.R
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@ -46,6 +46,8 @@ test_that("as.mo works", {
expect_equal(as.character(as.mo("L. pneumophila")), "B_LGNLL_PNE")
expect_equal(as.character(as.mo("Strepto")), "B_STRPT")
expect_equal(as.character(as.mo("Streptococcus")), "B_STRPT") # not Peptostreptoccus
expect_equal(as.character(as.mo("Estreptococos grupo B")), "B_STRPT_GRB")
expect_equal(as.character(as.mo("Group B Streptococci")), "B_STRPT_GRB")
expect_equal(as.character(as.mo("B_STRPTC")), "B_STRPT") # old MO code (<=v0.5.0)
expect_equal(as.character(as.mo(c("GAS", "GBS"))), c("B_STRPT_GRA", "B_STRPT_GRB"))