From cf3c3ee8f7b0a86f9f4b458890eca3419ba7cc5c Mon Sep 17 00:00:00 2001 From: "Matthijs S. Berends" Date: Wed, 8 Jul 2020 22:55:17 +0200 Subject: [PATCH] (v1.2.0.9029) GitHub actions --- .github/workflows/check.yaml | 2 +- .github/workflows/lintr.yaml | 2 +- DESCRIPTION | 2 +- NEWS.md | 2 +- R/globals.R | 1 + docs/404.html | 2 +- docs/LICENSE-text.html | 2 +- docs/articles/SPSS.html | 20 +++++++++---------- .../empty-anchor.js | 15 ++++++++++++++ docs/articles/index.html | 2 +- docs/authors.html | 2 +- docs/index.html | 2 +- docs/news/index.html | 8 ++++---- docs/pkgdown.yml | 2 +- docs/reference/index.html | 2 +- 15 files changed, 41 insertions(+), 25 deletions(-) create mode 100644 docs/articles/SPSS_files/accessible-code-block-0.0.1/empty-anchor.js diff --git a/.github/workflows/check.yaml b/.github/workflows/check.yaml index 9d4cfac8..7613f363 100644 --- a/.github/workflows/check.yaml +++ b/.github/workflows/check.yaml @@ -48,7 +48,7 @@ jobs: # - {os: ubuntu-16.04, r: 'oldrel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"} - {os: windows-latest, r: 'devel'} - {os: macOS-latest, r: 'devel'} - - {os: ubuntu-16.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"} + # - {os: ubuntu-16.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"} # - {os: windows-latest, r: '3.6'} # - {os: ubuntu-16.04, r: '3.5', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"} # - {os: ubuntu-16.04, r: '3.4', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"} diff --git a/.github/workflows/lintr.yaml b/.github/workflows/lintr.yaml index a30b594e..c6b85746 100644 --- a/.github/workflows/lintr.yaml +++ b/.github/workflows/lintr.yaml @@ -63,5 +63,5 @@ jobs: shell: Rscript {0} - name: Lint - run: lintr::lint_package(linters = with_defaults(line_length_linter = NULL, trailing_whitespace_linter = NULL, object_name_linter = NULL, cyclocomp_linter = NULL, object_usage_linter = NULL, object_length_linter = object_length_linter(length = 50L)), exclusions = list("R/aa_helper_functions_dplyr.R")) + run: lintr::lint_package(linters = lintr::with_defaults(line_length_linter = NULL, trailing_whitespace_linter = NULL, object_name_linter = NULL, cyclocomp_linter = NULL, object_usage_linter = NULL, object_length_linter = lintr::object_length_linter(length = 50L)), exclusions = list("R/aa_helper_functions_dplyr.R")) shell: Rscript {0} diff --git a/DESCRIPTION b/DESCRIPTION index 693b3389..f7afae4b 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,5 +1,5 @@ Package: AMR -Version: 1.2.0.9028 +Version: 1.2.0.9029 Date: 2020-07-08 Title: Antimicrobial Resistance Analysis Authors@R: c( diff --git a/NEWS.md b/NEWS.md index 7c8176d4..0eb541f0 100755 --- a/NEWS.md +++ b/NEWS.md @@ -1,4 +1,4 @@ -# AMR 1.2.0.9028 +# AMR 1.2.0.9029 ## Last updated: 08-Jul-2020 ### New diff --git a/R/globals.R b/R/globals.R index 4adde02d..2e2c7751 100755 --- a/R/globals.R +++ b/R/globals.R @@ -34,6 +34,7 @@ globalVariables(c(".", "col_id", "count", "count.x", + "data", "date_lab", "diff.percent", "First name", diff --git a/docs/404.html b/docs/404.html index 34c898b5..03c2b382 100644 --- a/docs/404.html +++ b/docs/404.html @@ -81,7 +81,7 @@ AMR (for R) - 1.2.0.9028 + 1.2.0.9029 diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html index ea33ab90..95c14eb1 100644 --- a/docs/LICENSE-text.html +++ b/docs/LICENSE-text.html @@ -81,7 +81,7 @@ AMR (for R) - 1.2.0.9028 + 1.2.0.9029 diff --git a/docs/articles/SPSS.html b/docs/articles/SPSS.html index 11cde0ec..fd8a38d6 100644 --- a/docs/articles/SPSS.html +++ b/docs/articles/SPSS.html @@ -20,7 +20,7 @@ - + +// v0.0.1 +// Written by JooYoung Seo (jooyoung@psu.edu) and Atsushi Yasumoto on June 1st, 2020. + +document.addEventListener('DOMContentLoaded', function() { + const codeList = document.getElementsByClassName("sourceCode"); + for (var i = 0; i < codeList.length; i++) { + var linkList = codeList[i].getElementsByTagName('a'); + for (var j = 0; j < linkList.length; j++) { + if (linkList[j].innerHTML === "") { + linkList[j].setAttribute('aria-hidden', 'true'); + } + } + } +}); diff --git a/docs/articles/index.html b/docs/articles/index.html index 6ce639a9..a614f88a 100644 --- a/docs/articles/index.html +++ b/docs/articles/index.html @@ -81,7 +81,7 @@ AMR (for R) - 1.2.0.9028 + 1.2.0.9029 diff --git a/docs/authors.html b/docs/authors.html index 3dcb347f..0cfc6430 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -81,7 +81,7 @@ AMR (for R) - 1.2.0.9028 + 1.2.0.9029 diff --git a/docs/index.html b/docs/index.html index fb59f0ec..11a25448 100644 --- a/docs/index.html +++ b/docs/index.html @@ -43,7 +43,7 @@ AMR (for R) - 1.2.0.9028 + 1.2.0.9029 diff --git a/docs/news/index.html b/docs/news/index.html index 2240fed7..a5c04b71 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -81,7 +81,7 @@ AMR (for R) - 1.2.0.9028 + 1.2.0.9029 @@ -229,9 +229,9 @@ Source: NEWS.md -
-

-AMR 1.2.0.9028 Unreleased +
+

+AMR 1.2.0.9029 Unreleased

diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index ffb098d4..e588429a 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -10,7 +10,7 @@ articles: WHONET: WHONET.html benchmarks: benchmarks.html resistance_predict: resistance_predict.html -last_built: 2020-07-08T18:41Z +last_built: 2020-07-08T20:53Z urls: reference: https://msberends.github.io/AMR/reference article: https://msberends.github.io/AMR/articles diff --git a/docs/reference/index.html b/docs/reference/index.html index 13d0d6e2..9f1dd02f 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -81,7 +81,7 @@ AMR (for R) - 1.2.0.9028 + 1.2.0.9029