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(v1.6.0.9044) betalactams() selector

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dr. M.S. (Matthijs) Berends
2021-05-18 00:53:04 +02:00
parent be49131ed7
commit cfb7df823e
28 changed files with 275 additions and 200 deletions
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data-raw/AMR_latest.tar.gz
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data-raw/_install_deps.R
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@ -23,7 +23,14 @@
# how to conduct AMR data analysis: https://msberends.github.io/AMR/ #
# ==================================================================== #
pkg_suggests <- AMR:::trimws(unlist(strsplit(packageDescription("AMR")$Suggests, ",(\n)?")))
install.packages("data-raw/AMR_latest.tar.gz", dependencies = FALSE)
# some old R instances have trouble installing tinytest, so we ship it too
# R < 3.2 does not contain trimws(), which is part of this script and of a tinytest script
trimws <- AMR:::trimws
intall.packages("data-raw/tinytest_1.2.4.tar.gz")
pkg_suggests <- trimws(unlist(strsplit(packageDescription("AMR")$Suggests, ",(\n)?")))
to_install <- pkg_suggests[!pkg_suggests %in% rownames(utils::installed.packages())]
to_update <- as.data.frame(utils::old.packages(repos = "https://cran.rstudio.com/"), stringsAsFactors = FALSE)