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(v1.6.0.9044) betalactams() selector
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@ -4,6 +4,7 @@
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\alias{antibiotic_class_selectors}
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\alias{ab_class}
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\alias{aminoglycosides}
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\alias{betalactams}
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\alias{carbapenems}
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\alias{cephalosporins}
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\alias{cephalosporins_1st}
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@ -23,6 +24,8 @@ ab_class(ab_class, only_rsi_columns = FALSE)
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aminoglycosides(only_rsi_columns = FALSE)
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betalactams(only_rsi_columns = FALSE)
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carbapenems(only_rsi_columns = FALSE)
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cephalosporins(only_rsi_columns = FALSE)
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@ -61,6 +64,8 @@ These functions help to select the columns of antibiotics that are of a specific
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\strong{\Sexpr{ifelse(as.double(R.Version()$major) + (as.double(R.Version()$minor) / 10) < 3.2, paste0("NOTE: THESE FUNCTIONS DO NOT WORK ON YOUR CURRENT R VERSION. These functions require R version 3.2 or later - you have ", R.version.string, "."), "")}}
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All columns will be searched for known antibiotic names, abbreviations, brand names and codes (ATC, EARS-Net, WHO, etc.) in the \link{antibiotics} data set. This means that a selector like e.g. \code{\link[=aminoglycosides]{aminoglycosides()}} will pick up column names like 'gen', 'genta', 'J01GB03', 'tobra', 'Tobracin', etc.
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The group of betalactams consists of all carbapenems, cephalosporins and penicillins.
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}
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\section{Stable Lifecycle}{
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@ -3,6 +3,7 @@
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\name{filter_ab_class}
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\alias{filter_ab_class}
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\alias{filter_aminoglycosides}
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\alias{filter_betalactams}
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\alias{filter_carbapenems}
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\alias{filter_cephalosporins}
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\alias{filter_1st_cephalosporins}
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@ -35,6 +36,14 @@ filter_aminoglycosides(
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...
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)
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filter_betalactams(
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x,
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result = NULL,
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scope = "any",
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only_rsi_columns = FALSE,
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...
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)
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filter_carbapenems(
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x,
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result = NULL,
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@ -157,6 +166,8 @@ Filter isolates on results in specific antimicrobial classes. This makes it easy
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}
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\details{
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All columns of \code{x} will be searched for known antibiotic names, abbreviations, brand names and codes (ATC, EARS-Net, WHO, etc.). This means that a filter function like e.g. \code{\link[=filter_aminoglycosides]{filter_aminoglycosides()}} will include column names like 'gen', 'genta', 'J01GB03', 'tobra', 'Tobracin', etc.
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The group of betalactams consists of all carbapenems, cephalosporins and penicillins.
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}
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\section{Stable Lifecycle}{
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