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@ -38,7 +38,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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@ -314,18 +314,18 @@ Unique: 2</p>
<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span></span>
<span><span class="co"># rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span></span>
<span><span class="co"># 1 I R S R I S</span></span>
<span><span class="co"># 2 I S S S S S</span></span>
<span><span class="co"># 3 R I R I S I</span></span>
<span><span class="co"># 4 R I R R S R</span></span>
<span><span class="co"># 5 S S S I R I</span></span>
<span><span class="co"># 6 I S I I S R</span></span>
<span><span class="co"># 1 S I S S I R</span></span>
<span><span class="co"># 2 S R S S R S</span></span>
<span><span class="co"># 3 I I S R I I</span></span>
<span><span class="co"># 4 R R R I R R</span></span>
<span><span class="co"># 5 R I S I R S</span></span>
<span><span class="co"># 6 S S S S S I</span></span>
<span><span class="co"># kanamycin</span></span>
<span><span class="co"># 1 R</span></span>
<span><span class="co"># 2 S</span></span>
<span><span class="co"># 3 S</span></span>
<span><span class="co"># 2 R</span></span>
<span><span class="co"># 3 I</span></span>
<span><span class="co"># 4 R</span></span>
<span><span class="co"># 5 S</span></span>
<span><span class="co"># 5 I</span></span>
<span><span class="co"># 6 I</span></span></code></pre></div>
<p>We can now add the interpretation of MDR-TB to our data set. You can use:</p>
<div class="sourceCode" id="cb9"><pre class="downlit sourceCode r">
@ -357,40 +357,40 @@ Unique: 5</p>
<tr class="odd">
<td align="left">1</td>
<td align="left">Mono-resistant</td>
<td align="right">3309</td>
<td align="right">66.18%</td>
<td align="right">3309</td>
<td align="right">66.18%</td>
<td align="right">3196</td>
<td align="right">63.92%</td>
<td align="right">3196</td>
<td align="right">63.92%</td>
</tr>
<tr class="even">
<td align="left">2</td>
<td align="left">Negative</td>
<td align="right">923</td>
<td align="right">18.46%</td>
<td align="right">4232</td>
<td align="right">84.64%</td>
<td align="right">1003</td>
<td align="right">20.06%</td>
<td align="right">4199</td>
<td align="right">83.98%</td>
</tr>
<tr class="odd">
<td align="left">3</td>
<td align="left">Multi-drug-resistant</td>
<td align="right">452</td>
<td align="right">9.04%</td>
<td align="right">4684</td>
<td align="right">93.68%</td>
<td align="right">473</td>
<td align="right">9.46%</td>
<td align="right">4672</td>
<td align="right">93.44%</td>
</tr>
<tr class="even">
<td align="left">4</td>
<td align="left">Poly-resistant</td>
<td align="right">221</td>
<td align="right">4.42%</td>
<td align="right">4905</td>
<td align="right">98.10%</td>
<td align="right">224</td>
<td align="right">4.48%</td>
<td align="right">4896</td>
<td align="right">97.92%</td>
</tr>
<tr class="odd">
<td align="left">5</td>
<td align="left">Extensively drug-resistant</td>
<td align="right">95</td>
<td align="right">1.90%</td>
<td align="right">104</td>
<td align="right">2.08%</td>
<td align="right">5000</td>
<td align="right">100.00%</td>
</tr>