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@ -10,7 +10,7 @@
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9006</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9007</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -178,42 +178,42 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <mic></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.125 64 16 128 256 0.0625 8 0.125 0.025 0.0625</span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 2 16 0.002 16 0.002 64 0.25 256 0.01 256 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 2 2 0.001 8 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.01 1 0.025 4 2 256 0.125 0.005 0.0625 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 4 0.005 64 1 16 0.5 <=0.002 0.5 0.005 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.005 16 16 128 0.01 16 <=0.002</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <disk></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 46 49 33 49 40 41 18 50 25 50 48 50 40 32 15 46 29 13 12 11 45 25 35 16 6</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 49 25 17 40 42 40 37 45 6 46 13 6 48 38 38 28 46 14 40 9 19 41 41 40 43</span>
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<span class="r-in"><span><span class="fu">random_rsi</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <rsi></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] S R I I I I I I R R S S I I S S S R R S S S R S S</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] S S R R R R I S I I S R I S S R I S S R S R I R S</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <mic></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.25 <=0.001 0.0625 0.025 0.002 8 0.125 0.5 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.25 0.002 64 >=128 0.5 0.5 0.125 0.002 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.005 0.125 0.125 >=128 0.005 32 0.0625 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.5 32 4 4 0.002 8 2 0.025 <=0.001</span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.25 128 0.002 16 32 0.125 16 0.5 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 256 16 0.0625 <=0.001 0.5 256 32 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <mic></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 2 1 4 32 4 4 16 16 8 32 8 8 2 32 4 16 16 8 4 32 2 2 8 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 >=16 >=16 >=16 >=16 2 <=1 8 8 4 8 <=1 4 <=1 <=1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] >=16 >=16 <=1 <=1 8 8 4 2 4 8 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <mic></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 0.5 1 <=0.0625 <=0.0625 0.25 >=4 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [9] >=4 0.125 2 >=4 >=4 1 0.25 >=4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [17] >=4 1 <=0.0625 2 <=0.0625 2 0.25 <=0.0625</span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 0.5 0.0625 4 >=16 1 0.5 0.5 0.0625 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 4 0.25 0.25 0.0625 8 4 8 0.25 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.25 4 1 >=16 <=0.025 4 <=0.025</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <disk></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 49 49 35 45 22 50 22 25 39 40 19 48 29 50 46 22 46 50 17 11 35 11 26 45 24</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 21 37 33 13 16 25 34 10 46 40 48 31 42 13 33 30 9 24 15 41 20 22 43 45 42</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <disk></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 11 11 13 12 11 12 15 14 12 13 15 16 15 14 12 11 12 14 12 13 15 14 14 16 15</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 13 17 15 16 16 11 16 14 15 13 12 13 13 14 14 16 13 16 14 17 13 15 11 17 14</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <disk></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 17 19 16 17 26 19 19 19 24 26 19 21 15 21 16 27 23 16 18 26 27 16 25 15 22</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 18 20 17 22 27 15 22 15 18 25 20 19 22 19 15 23 15 19 27 17 23 15 16 15 21</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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