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cfta streptococci

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dr. M.S. (Matthijs) Berends
2019-04-09 10:34:40 +02:00
parent 30b559827c
commit cffb7787d8
22 changed files with 190 additions and 190 deletions
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10
man/age_groups.Rd
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@ -25,9 +25,9 @@ To split ages, the input can be:
\item{A character:}
\itemize{
\item{\code{"children"}, equivalent of: \code{c(0, 1, 2, 4, 6, 13, 18)}. This will split on 0, 1, 2-3, 4-5, 6-12, 13-17 and 18+.}
\item{\code{"elderly"} or \code{"seniors"}, equivalent of: \code{c(65, 75, 85, 95)}. This will split on 0-64, 65-74, 75-84, 85-94 and 95+.}
\item{\code{"fives"}, equivalent of: \code{1:24 * 5}. This will split on 0-4, 5-9, 10-14, 15-19 and so forth, until 120.}
\item{\code{"tens"}, equivalent of: \code{1:12 * 10}. This will split on 0-9, 10-19, 20-29 and so forth, until 120.}
\item{\code{"elderly"} or \code{"seniors"}, equivalent of: \code{c(65, 75, 85)}. This will split on 0-64, 65-74, 75-84, 85+.}
\item{\code{"fives"}, equivalent of: \code{1:20 * 5}. This will split on 0-4, 5-9, 10-14, ..., 90-94, 95-99, 100+.}
\item{\code{"tens"}, equivalent of: \code{1:10 * 10}. This will split on 0-9, 10-19, 20-29, ... 80-89, 90-99, 100+.}
}
}
}
@ -46,11 +46,11 @@ age_groups(ages, 50)
age_groups(ages, c(20, 50))
# split into groups of ten years
age_groups(ages, 1:12 * 10)
age_groups(ages, 1:10 * 10)
age_groups(ages, split_at = "tens")
# split into groups of five years
age_groups(ages, 1:24 * 5)
age_groups(ages, 1:20 * 5)
age_groups(ages, split_at = "fives")
# split specifically for children

5
man/as.mo.Rd
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@ -1,5 +1,5 @@
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/mo.R, R/mo_history.R
% Please edit documentation in R/mo.R
\name{as.mo}
\alias{as.mo}
\alias{mo}
@ -7,7 +7,6 @@
\alias{mo_failures}
\alias{mo_uncertainties}
\alias{mo_renamed}
\alias{clean_mo_history}
\title{Transform to microorganism ID}
\usage{
as.mo(x, Becker = FALSE, Lancefield = FALSE, allow_uncertain = TRUE,
@ -20,8 +19,6 @@ mo_failures()
mo_uncertainties()
mo_renamed()
clean_mo_history(...)
}
\arguments{
\item{x}{a character vector or a \code{data.frame} with one or two columns}