From d033da29b8107f5dfa6690d5b98d697c8478e301 Mon Sep 17 00:00:00 2001 From: Matthijs Berends Date: Sun, 13 Nov 2022 07:39:44 +0100 Subject: [PATCH] cleanup --- vignettes/datasets.Rmd | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) diff --git a/vignettes/datasets.Rmd b/vignettes/datasets.Rmd index f0cff5687..9f12bbd80 100644 --- a/vignettes/datasets.Rmd +++ b/vignettes/datasets.Rmd @@ -156,7 +156,7 @@ microorganisms %>% ``` -## `antibiotics`: Antibiotic Agents +## `antibiotics`: Antibiotic (+Antifungal) Drugs `r structure_txt(antibiotics)` @@ -173,6 +173,7 @@ This data set contains all EARS-Net and ATC codes gathered from WHO and WHONET, * [ATC/DDD index from WHO Collaborating Centre for Drug Statistics Methodology](https://www.whocc.no/atc_ddd_index/) (note: this may not be used for commercial purposes, but is freely available from the WHO CC website for personal use) * [PubChem by the US National Library of Medicine](https://pubchem.ncbi.nlm.nih.gov) * [WHONET software 2019](https://whonet.org) +* [LOINC (Logical Observation Identifiers Names and Codes](https://loinc.org) ### Example content @@ -183,7 +184,7 @@ antibiotics %>% ``` -## `antivirals`: Antiviral Agents +## `antivirals`: Antiviral Drugs `r structure_txt(antivirals)` @@ -191,7 +192,7 @@ This data set is in R available as `antivirals`, after you load the `AMR` packag `r download_txt("antivirals")` -The tab-separated text file and Microsoft Excel workbook, and SAS, SPSS and Stata files all contain the trade names as comma separated values. +The tab-separated text file and Microsoft Excel workbook, and SAS, SPSS and Stata files all contain the trade names and LOINC codes as comma separated values. ### Source @@ -199,6 +200,7 @@ This data set contains all ATC codes gathered from WHO and all compound IDs from * [ATC/DDD index from WHO Collaborating Centre for Drug Statistics Methodology](https://www.whocc.no/atc_ddd_index/) (note: this may not be used for commercial purposes, but is freely available from the WHO CC website for personal use) * [PubChem by the US National Library of Medicine](https://pubchem.ncbi.nlm.nih.gov) +* [LOINC (Logical Observation Identifiers Names and Codes](https://loinc.org) ### Example content